RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ZNF554Q86TJ5 538 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 AOPEPQ8N6M6 819 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TTC29Q8NA56 475 aaPredicted RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 CNBD1Q8NA66 436 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 ACMSDQ8TDX5 336 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TTC17Q96AE7 1141 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 CDCA7LQ96GN5 454 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 CCSER2Q9H7U1 834 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 EPB41L5Q9HCM4 733 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 ATXN10Q9UBB4 475 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 GUCA1BQ9UMX6 200 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 AOX1Q06278 1338 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 COL14A1Q05707 1796 aaKnown RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 KANSL1LA0AUZ9 987 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 ANO9A1A5B4 782 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 CCDC85CA6NKD9 419 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 M0R3G1 203 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 AP1G2O75843 785 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 GAP43P17677 238 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 SOX6P35712 828 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 UBA7P41226 1012 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 YWHAEP62258 255 aaKnown RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 WLSQ5T9L3 541 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 RAB44Q7Z6P3 723 aaPredicted RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 NOSTRINQ8IVI9 506 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 CCDC105Q8IYK2 499 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 MYOCDQ8IZQ8 938 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 CRACR2BQ8N4Y2 399 aaPredicted RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 STKLD1Q8NE28 680 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 DNAJC9Q8WXX5 260 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 ABHD8Q96I13 439 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 ANKRD36BP1Q96IX9 119 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TSPAN18Q96SJ8 248 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 LSG1Q9H089 658 aaKnown RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 HMG20AQ9NP66 347 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TIMMDC1Q9NPL8 285 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 EURLQ9NYK6 297 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 ANKFY1Q9P2R3 1169 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 PHF11Q9UIL8 331 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 SERPINB13Q9UIV8 391 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 INTUQ9ULD6 942 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 PRG3Q9Y2Y8 225 aaPredicted RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 SPATA31A5Q5VU36 1347 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 UBN2Q6ZU65 1347 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 SPATA31A7Q8IWB4 1347 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 OVOS2A0A0G2JMS6 1433 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 OVOS2A0A0J9YW53 1432 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 OVOS2Q6IE36 1432 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 USP32Q8NFA0 1604 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TNS2Q63HR2 1409 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TNS3Q68CZ2 1445 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 hCG_2014768A0A024R1R8 64 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 CCDC194A0A1B0GVG4 234 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 POTEFA5A3E0 1075 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 GMNCA6NCL1 334 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TRIM24O15164 1050 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 NVLO15381 856 aaKnown RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 PRLP01236 227 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 FESP07332 822 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 GJB2P29033 226 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 PLCD1P51178 756 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 PLIN5Q00G26 463 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 PPP2R5CQ13362 524 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TRIM25Q14258 630 aaKnown RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 E2F5Q15329 346 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 TRADDQ15628 312 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 E2F4Q16254 413 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 SLC15A2Q16348 729 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 RGL3Q3MIN7 710 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 SGO2Q562F6 1265 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 RRAGBQ5VZM2 374 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 PDZD4Q76G19 769 aaPredicted RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 VPS37DQ86XT2 251 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 SCYL3Q8IZE3 742 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 WDR36Q8NI36 951 aaKnown RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 RIN3Q8TB24 985 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 PDCD6IPQ8WUM4 868 aaKnown RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 JADE3Q92613 823 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 PBXIP1Q96AQ6 731 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 PPP1R13BQ96KQ4 1090 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 CARD14Q9BXL6 1004 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 FOXP3Q9BZS1 431 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 A1CFQ9NQ94 594 aaKnown RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 PIH1D3Q9NQM4 214 aaKnown RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 TMOD2Q9NZR1 351 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 COPG2Q9UBF2 871 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 PCSK1NQ9UHG2 260 aa3.84□□□□□ -1.79
USP53-205ENST00000509769 IPO11Q9UI26 975 aaKnown RBP3.84□□□□□ -1.79
USP53-205ENST00000509769 CDC42BPAQ5VT25 1732 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.84□□□□□ -1.8
USP53-205ENST00000509769 GRID2IPA4D2P6 1211 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 TMEM110-MUSTN1A8MSY1 372 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 SMAPO00193 183 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 APAF1O14727 1248 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 N4BP1O75113 896 aaKnown RBP3.84□□□□□ -1.8
USP53-205ENST00000509769 IFNA16P05015 189 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 MYL1P05976 194 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 TRIM49P0CI25 452 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 TRIM49CP0CI26 452 aa3.84□□□□□ -1.8
USP53-205ENST00000509769 PNMA6AP0CW24 399 aaPredicted RBP3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms