RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 PLEKHA8P1O95397 391 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 GGPS1O95749 300 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 F2P00734 622 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 CYP2C9P11712 490 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 COL6A3P12111 3177 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 HSPA4P34932 840 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 RBL2Q08999 1139 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 PTGISQ16647 500 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 HSDL1Q3SXM5 330 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 APOA5Q6Q788 366 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 USP17L6PQ6QN14 398 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 CLEC17AQ6ZS10 378 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 NLRX1Q86UT6 975 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 SKAP1Q86WV1 359 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 CCDC155Q8N6L0 562 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 C7orf31Q8N865 590 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 GIMAP8Q8ND71 665 aaPredicted RBP9.18□□□□□ -0.94
SCN1A-207ENST00000507401 SLC17A8Q8NDX2 589 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 IL31RAQ8NI17 732 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 CAGE1Q8TC20 777 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 AFAP1L1Q8TED9 768 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 PIBF1Q8WXW3 757 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 VWCEQ96DN2 955 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 CDHR1Q96JP9 859 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 SPATA33Q96N06 139 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 CDX2Q99626 313 aaPredicted RBP9.18□□□□□ -0.94
SCN1A-207ENST00000507401 USP26Q9BXU7 913 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 LRRC2Q9BYS8 371 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 TTYH1Q9H313 450 aaPredicted RBP9.18□□□□□ -0.94
SCN1A-207ENST00000507401 MLXIPQ9HAP2 919 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 GTF2IRD1Q9UHL9 959 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 NOD1Q9Y239 953 aa9.18□□□□□ -0.94
SCN1A-207ENST00000507401 CCDC196A0A1B0GTZ2 297 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 hCG_1984214I3L0E3 225 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 LCE2BO14633 110 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 REC8O95072 547 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 ACTN1P12814 892 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 UBA1P22314 1058 aaKnown RBP9.17□□□□□ -0.94
SCN1A-207ENST00000507401 RAB30Q15771 203 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 KIAA0753Q2KHM9 967 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 ADCK5Q3MIX3 580 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 PLA2G2CQ5R387 149 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 GDF6Q6KF10 455 aaPredicted RBP9.17□□□□□ -0.94
SCN1A-207ENST00000507401 METTL7BQ6UX53 244 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 OTOP2Q7RTS6 562 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 MICU3Q86XE3 530 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 HSCBQ8IWL3 235 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 CMTR1Q8N1G2 835 aaKnown RBP9.17□□□□□ -0.94
SCN1A-207ENST00000507401 CCDC82Q8N4S0 544 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 FAM160A2Q8N612 972 aaPredicted RBP9.17□□□□□ -0.94
SCN1A-207ENST00000507401 ZNF713Q8N859 430 aaPredicted RBP9.17□□□□□ -0.94
SCN1A-207ENST00000507401 PHOSPHO2Q8TCD6 241 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 TIFAQ96CG3 184 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 SCLYQ96I15 445 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 CTAGE1Q96RT6 745 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 SPSB2Q99619 263 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 C16orf70Q9BSU1 422 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 GLT8D2Q9H1C3 349 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 FAM217BQ9NTX9 383 aaPredicted RBP9.17□□□□□ -0.94
SCN1A-207ENST00000507401 CXXC1Q9P0U4 656 aaPredicted RBP9.17□□□□□ -0.94
SCN1A-207ENST00000507401 HDAC6Q9UBN7 1215 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 MSRAQ9UJ68 235 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 SLC4A7Q9Y6M7 1214 aa9.17□□□□□ -0.94
SCN1A-207ENST00000507401 SPDYE3A6NKU9 549 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 H3BRB1 525 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 FOSP01100 380 aaPredicted RBP9.16□□□□□ -0.94
SCN1A-207ENST00000507401 SELPP16109 830 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 RXRAP19793 462 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 PSMA5P28066 241 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 PTK7Q13308 1070 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 RTN1Q16799 776 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 BRICD5Q6PL45 260 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 GPRASP2Q96D09 838 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 FAM161BQ96MY7 647 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 PBX4Q9BYU1 374 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 GTPBP4Q9BZE4 634 aaKnown RBP9.16□□□□□ -0.94
SCN1A-207ENST00000507401 SLC6A16Q9GZN6 736 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 ZNF576Q9H609 170 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 TUT1Q9H6E5 874 aaKnown RBP9.16□□□□□ -0.94
SCN1A-207ENST00000507401 RTEL1Q9NZ71 1219 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 PRDM4Q9UKN5 801 aa9.16□□□□□ -0.94
SCN1A-207ENST00000507401 KLF18A0A0U1RQI7 1052 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 GRXCR1A8MXD5 290 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 NOP56O00567 594 aaKnown RBP9.15□□□□□ -0.94
SCN1A-207ENST00000507401 BAIAP3O94812 1187 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 CXCL10P02778 98 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 HOXC8P31273 242 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 EVCP57679 992 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 CHMP4BP1P59074 171 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 FGD1P98174 961 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 SEMA3FQ13275 785 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 MCTP2Q6DN12 878 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 BLOC1S2Q6QNY1 142 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 LIAT1Q6ZQX7 453 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 TRIM67Q6ZTA4 783 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 CYFIP1Q7L576 1253 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 HEATR3Q7Z4Q2 680 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 DEFB128Q7Z7B8 93 aa9.15□□□□□ -0.94
SCN1A-207ENST00000507401 GPKOWQ92917 476 aaPredicted RBP eCLIP9.15□□□□□ -0.94
SCN1A-207ENST00000507401 GPR20Q99678 358 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms