RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 RIC8AQ9NPQ8 531 aa13.2□□□□□ -0.3
HMGCS1-204ENST00000507293 KCNH7Q9NS40 1196 aa13.2□□□□□ -0.3
HMGCS1-204ENST00000507293 TMEM260Q9NX78 707 aa13.2□□□□□ -0.3
HMGCS1-204ENST00000507293 SLC9A2Q9UBY0 812 aa13.2□□□□□ -0.3
HMGCS1-204ENST00000507293 WDR81Q562E7 1941 aa13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 TTC3P53804 2025 aa13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 KLF18A0A0U1RQI7 1052 aa13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 STXBP3O00186 592 aa13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 CDC45O75419 566 aa13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 ARP10275 920 aa13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 COL9A1P20849 921 aa13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 TSGA10IPQ3SY00 556 aa13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 MRPL38Q96DV4 380 aaKnown RBP13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 SDF4Q9BRK5 362 aa13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 AZI2Q9H6S1 392 aa13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 UBE2ZQ9H832 354 aaPredicted RBP13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 CDY2AQ9Y6F7 541 aa13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 V9GY48 417 aaPredicted RBP13.19□□□□□ -0.3
HMGCS1-204ENST00000507293 NFASCO94856 1347 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 MYH9P35579 1960 aaKnown RBP13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 SMCO2A6NFE2 343 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 H3BNC9 293 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 hCG_1984214I3L0E3 225 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 FOSP01100 380 aaPredicted RBP13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 INSRRP14616 1297 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 CDC27P30260 824 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 ACTR2P61160 394 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 MRPS6P82932 125 aaKnown RBP13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 ITGB3BPQ13352 177 aaPredicted RBP13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 GPM6BQ13491 265 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 KRT32Q14532 448 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 PTPROQ16827 1216 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 FBXO47Q5MNV8 452 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 TMEM192Q8IY95 271 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 ZNF713Q8N859 430 aaPredicted RBP13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 IL17RAQ96F46 866 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 FAM49AQ9H0Q0 323 aaPredicted RBP13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 AGO4Q9HCK5 861 aaKnown RBP13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 FAM217BQ9NTX9 383 aaPredicted RBP13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 BARHL2Q9NY43 387 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 NAP1L2Q9ULW6 460 aaPredicted RBP13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 TRPC6Q9Y210 931 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 EVPLQ92817 2033 aa13.18□□□□□ -0.3
HMGCS1-204ENST00000507293 ADGRA3Q8IWK6 1321 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 RRN3P2A6NIE6 340 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 CPA1P15085 419 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 KCNA5P22460 613 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 CTNNB1P35222 781 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 SREBF1P36956 1147 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 STAT5BP51692 787 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 AP3B2Q13367 1082 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 PLCB4Q15147 1175 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 TIGD5Q53EQ6 642 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 CEP55Q53EZ4 464 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 TSHZ1Q6ZSZ6 1077 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 TEX2Q8IWB9 1127 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 FIBCD1Q8N539 461 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 TRAPPC12Q8WVT3 735 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 RAPGEFL1Q9UHV5 662 aa13.17□□□□□ -0.3
HMGCS1-204ENST00000507293 M0QZ92 97 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 DDX39AO00148 427 aaKnown RBP13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 ENPP3O14638 875 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 HMGB1P09429 215 aaKnown RBP13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 CD52P31358 61 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 CLK2P49760 499 aaKnown RBP13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 RCAN1P53805 252 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 FGD1P98174 961 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 TMEM62Q0P6H9 643 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 LEXMQ3ZCV2 418 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 PLPPR4Q7Z2D5 763 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 BANK1Q8NDB2 785 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 LINC01599Q8WXQ3 324 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 GLT8D2Q9H1C3 349 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 AGO3Q9H9G7 860 aaKnown RBP13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 RC3H2Q9HBD1 1191 aaKnown RBP13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 PCDHA2Q9Y5H9 948 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 TRPV2Q9Y5S1 764 aa13.16□□□□□ -0.3
HMGCS1-204ENST00000507293 POTEB3A0JP26 581 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 MEIS1O00470 390 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 CCNE2O96020 404 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 RPLP2P05387 115 aaKnown RBP13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 LINC00271P0C7V0 271 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 ZNF76P36508 570 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 METAP2P50579 478 aaKnown RBP eCLIP13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 APOBRQ0VD83 1088 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 PFKFB3Q16875 520 aaPredicted RBP13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 TCEAL5Q5H9L2 206 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 IER5Q5VY09 327 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 JAKMIP3Q5VZ66 844 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 POTEBQ6S5H4 581 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 Q6ZUG5 572 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 NIPA1Q7RTP0 329 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 TNPO1Q92973 898 aaKnown RBP13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 JAKMIP1Q96N16 626 aaKnown RBP13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 C1QTNF1Q9BXJ1 281 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 NSUN3Q9H649 340 aaKnown RBP13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 EPHX3Q9H6B9 360 aa13.15□□□□□ -0.3
HMGCS1-204ENST00000507293 PLXNA4Q9HCM2 1894 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms