RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 FAM160B1Q5W0V3 765 aa16.43■□□□□ 0.22
HMGCS1-203ENST00000507004 FAM177A1Q8N128 213 aaPredicted RBP16.43■□□□□ 0.22
HMGCS1-203ENST00000507004 REXO1Q8N1G1 1221 aaKnown RBP16.43■□□□□ 0.22
HMGCS1-203ENST00000507004 MICALL1Q8N3F8 863 aa16.43■□□□□ 0.22
HMGCS1-203ENST00000507004 SP7Q8TDD2 431 aaPredicted RBP16.43■□□□□ 0.22
HMGCS1-203ENST00000507004 C22orf23Q9BZE7 217 aa16.43■□□□□ 0.22
HMGCS1-203ENST00000507004 CERS4Q9HA82 394 aa16.43■□□□□ 0.22
HMGCS1-203ENST00000507004 AGO4Q9HCK5 861 aaKnown RBP16.43■□□□□ 0.22
HMGCS1-203ENST00000507004 PKD2L1Q9P0L9 805 aa16.43■□□□□ 0.22
HMGCS1-203ENST00000507004 DOCK5Q9H7D0 1870 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 MICAL3Q7RTP6 2002 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 ATG7O95352 703 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 ADD1P35611 737 aaKnown RBP16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 EVCP57679 992 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 ACTR2P61160 394 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 APOBRQ0VD83 1088 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.42■□□□□ 0.224e-9■□□□□ 9.5
HMGCS1-203ENST00000507004 SKAP1Q86WV1 359 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 NME8Q8N427 588 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 YME1L1Q96TA2 773 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 FTHL17Q9BXU8 183 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 TBC1D22BQ9NU19 505 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 TRPC6Q9Y210 931 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 RWDD3Q9Y3V2 267 aa16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 PRRC2BQ5JSZ5 2229 aaKnown RBP16.42■□□□□ 0.22
HMGCS1-203ENST00000507004 COL4A6Q14031 1691 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 LCHNA4D1U4 455 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 HBP1O60381 514 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 EIF5BO60841 1220 aaKnown RBP16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 INSRRP14616 1297 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 IFNAR1P17181 557 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 MARK3P27448 753 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 PTPROQ16827 1216 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 TCTN1Q2MV58 587 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 ODR4Q5SWX8 454 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 MIS18BP1Q6P0N0 1132 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 CPLX2Q6PUV4 134 aaKnown RBP16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 PLA2G4DQ86XP0 818 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 TRIM22Q8IYM9 498 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 SH3GLB2Q9NR46 395 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 RNF216Q9NWF9 866 aaPredicted RBP16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 PCDHA2Q9Y5H9 948 aa16.41■□□□□ 0.22
HMGCS1-203ENST00000507004 COL1A2P08123 1366 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 IGKV6D-21A0A0A0MT36 114 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 TNFRSF10AO00220 468 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 RFXAPO00287 272 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 CHRNA1P02708 482 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 ARP10275 920 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 MRPS6P82932 125 aaKnown RBP16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 MGAT3Q09327 533 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 JAKMIP3Q5VZ66 844 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 FAM117BQ6P1L5 589 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 TSHZ1Q6ZSZ6 1077 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 SMAP1Q8IYB5 467 aaPredicted RBP16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 FBXO22Q8NEZ5 403 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 TM6SF1Q9BZW5 370 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 SUGCTQ9HAC7 445 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 PRDM6Q9NQX0 595 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 PTPRSQ13332 1948 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 TTC28Q96AY4 2481 aa16.4■□□□□ 0.22
HMGCS1-203ENST00000507004 SMIM35A0A1B0GVV1 85 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 POTEB3A0JP26 581 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 EPOPA6NHQ4 379 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 IPO5O00410 1097 aaKnown RBP16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 BACH1O14867 736 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 LPXNO60711 386 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 ARHGEF15O94989 841 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 KRT76Q01546 638 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 ITGB3BPQ13352 177 aaPredicted RBP16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 PLCB4Q15147 1175 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 FBXO47Q5MNV8 452 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 MARCH8Q5T0T0 291 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 ZNF746Q6NUN9 644 aaPredicted RBP16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 POTEBQ6S5H4 581 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 RUFY3Q7L099 469 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 TMCO2Q7Z6W1 182 aaPredicted RBP16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 ZNF710Q8N1W2 664 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 CYP2W1Q8TAV3 490 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 ATP8B4Q8TF62 1192 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 DNAJB3Q8WWF6 145 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 CRYGNQ8WXF5 182 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 HLA-CQ95604 372 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 PGBD1Q96JS3 809 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 PCYT2Q99447 389 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 TELO2Q9Y4R8 837 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 TRPV2Q9Y5S1 764 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 CYP46A1Q9Y6A2 500 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 CDY2AQ9Y6F7 541 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 KDM3AQ9Y4C1 1321 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 A0A0C4DFX4 3053 aa16.39■□□□□ 0.21
HMGCS1-203ENST00000507004 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 RB1P06400 928 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 GHRP10912 638 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 CIITAP33076 1130 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 IGBP1P78318 339 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 LPIN1Q14693 890 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 PKN1Q16512 942 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 ZNF484Q5JVG2 852 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 ERICH6BQ5W0A0 696 aa16.38■□□□□ 0.21
HMGCS1-203ENST00000507004 ABHD15Q6UXT9 468 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms