RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 ANKRD20A12PQ8NF67 263 aa6.88□□□□□ -1.31
SSBP1-213ENST00000496622 BLZF1Q9H2G9 400 aa6.88□□□□□ -1.31
SSBP1-213ENST00000496622 RETREG1Q9H6L5 497 aa6.88□□□□□ -1.31
SSBP1-213ENST00000496622 GMPR2Q9P2T1 348 aaKnown RBP6.88□□□□□ -1.31
SSBP1-213ENST00000496622 SEC63Q9UGP8 760 aaKnown RBP6.88□□□□□ -1.31
SSBP1-213ENST00000496622 PCDHA4Q9UN74 947 aa6.88□□□□□ -1.31
SSBP1-213ENST00000496622 BRCA1P38398 1863 aaKnown RBP6.88□□□□□ -1.31
SSBP1-213ENST00000496622 THSD7BQ9C0I4 1608 aa6.88□□□□□ -1.31
SSBP1-213ENST00000496622 GOLGA6L6A8MZA4 724 aa6.88□□□□□ -1.31
SSBP1-213ENST00000496622 M0R2N6 131 aa6.88□□□□□ -1.31
SSBP1-213ENST00000496622 CAPN5O15484 640 aaPredicted RBP6.88□□□□□ -1.31
SSBP1-213ENST00000496622 CCNT1O60563 726 aaKnown RBP6.88□□□□□ -1.31
SSBP1-213ENST00000496622 IRX1P78414 480 aaPredicted RBP6.88□□□□□ -1.31
SSBP1-213ENST00000496622 IQCB1Q15051 598 aa6.88□□□□□ -1.31
SSBP1-213ENST00000496622 DHX40Q8IX18 779 aaKnown RBP6.88□□□□□ -1.31
SSBP1-213ENST00000496622 SUPT20HQ8NEM7 779 aa6.88□□□□□ -1.31
SSBP1-213ENST00000496622 RRP36Q96EU6 259 aaKnown RBP6.88□□□□□ -1.31
SSBP1-213ENST00000496622 EEF2KMTQ96G04 330 aa6.88□□□□□ -1.31
SSBP1-213ENST00000496622 P2RX7Q99572 595 aaKnown RBP6.88□□□□□ -1.31
SSBP1-213ENST00000496622 TRIM5Q9C035 493 aa6.88□□□□□ -1.31
SSBP1-213ENST00000496622 SRPRBQ9Y5M8 271 aaKnown RBP6.88□□□□□ -1.31
SSBP1-213ENST00000496622 TIMM44O43615 452 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 EDIL3O43854 480 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 CUTAO60888 179 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 DGAT1O75907 488 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 AVPP01185 164 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 ATP1A3P13637 1013 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 LMOD1P29536 600 aaPredicted RBP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 SCTRP47872 440 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 NOVP48745 357 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 PSMC1P62191 440 aaKnown RBP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 TRAF1Q13077 416 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 PRKG1Q13976 671 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 NOLC1Q14978 699 aaKnown RBP eCLIP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 KARSQ15046 597 aaKnown RBP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 SLFN13Q68D06 897 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 TATDN1Q6P1N9 297 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 C11orf96Q7Z7L8 435 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 TRMT44Q8IYL2 757 aaKnown RBP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 RETREG2Q8NC44 543 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 NEK9Q8TD19 979 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 TBCKQ8TEA7 893 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 LRRC15Q8TF66 581 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 SNRNP27Q8WVK2 155 aaKnown RBP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 DHX36Q9H2U1 1008 aaKnown RBP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 RIOX1Q9H6W3 641 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 TMOD4Q9NZQ9 345 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 RABL2AQ9UBK7 228 aaPredicted RBP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 MAPK8IP1Q9UQF2 711 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 SOBPA7XYQ1 873 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 BECN2A8MW95 431 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 TMCO5BA8MYB1 307 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 TMEM232C9JQI7 657 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 PARNO95453 639 aaKnown RBP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 TDP2O95551 362 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 NDUFB10O96000 172 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 SNHG28P0DPA3 235 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 COPB2P35606 906 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 GNAQP50148 359 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 TGFB2P61812 414 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 HDLBPQ00341 1268 aaKnown RBP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 DHX8Q14562 1220 aaKnown RBP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 TSNAXIP1Q2TAA8 658 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 ZNF394Q53GI3 561 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 CIAPIN1Q6FI81 312 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 TAX1BP1Q86VP1 789 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 SMCR8Q8TEV9 937 aaPredicted RBP6.87□□□□□ -1.31
SSBP1-213ENST00000496622 AGBL1Q96MI9 1066 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 AGAP3Q96P47 875 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 SPZ1Q9BXG8 430 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 ZMYND12Q9H0C1 365 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 MYOZ2Q9NPC6 264 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 FBXO28Q9NVF7 368 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 SWAP70Q9UH65 585 aa6.87□□□□□ -1.31
SSBP1-213ENST00000496622 ERVH48-1M5A8F1 160 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 HOXA13P31271 388 aaPredicted RBP6.86□□□□□ -1.31
SSBP1-213ENST00000496622 TECP42680 631 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 TNNI2P48788 182 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 NR1H3Q13133 447 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 KLHL10Q6JEL2 608 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 C4orf32Q8N8J7 132 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 ADAMTS19Q8TE59 1207 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 C17orf50Q8WW18 174 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 TBC1D5Q92609 795 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 MMTAG2Q9BU76 263 aaKnown RBP6.86□□□□□ -1.31
SSBP1-213ENST00000496622 SEZ6LQ9BYH1 1024 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 KANSL2Q9H9L4 492 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 ITM2BQ9Y287 266 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 PIK3CDO00329 1044 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 SLC37A4O43826 429 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 STAU1O95793 577 aaKnown RBP6.86□□□□□ -1.31
SSBP1-213ENST00000496622 PEX19P40855 299 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 TXKP42681 527 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 TRPC1P48995 793 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 GMPSP49915 693 aaPredicted RBP6.86□□□□□ -1.31
SSBP1-213ENST00000496622 ATP2C1P98194 919 aaPredicted RBP6.86□□□□□ -1.31
SSBP1-213ENST00000496622 LRMPQ12912 555 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 STX1AQ16623 288 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 QRICH1Q2TAL8 776 aa6.86□□□□□ -1.31
SSBP1-213ENST00000496622 C6orf118Q5T5N4 469 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms