RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 PDXDC2PQ6P474 469 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 DTHD1Q6ZMT9 781 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 TRIM50Q86XT4 487 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 C4orf32Q8N8J7 132 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 ERMNQ8TAM6 284 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 ATP6V0A1Q93050 837 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 GABBR1Q9UBS5 961 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 STK24Q9Y6E0 443 aa19.24■□□□□ 0.67
HDAC6-235ENST00000495515 TLR3O15455 904 aaKnown RBP19.23■□□□□ 0.67
HDAC6-235ENST00000495515 TECP42680 631 aa19.23■□□□□ 0.67
HDAC6-235ENST00000495515 FXR2P51116 673 aaKnown RBP eCLIP19.23■□□□□ 0.67
HDAC6-235ENST00000495515 FAM173BQ6P4H8 233 aa19.23■□□□□ 0.67
HDAC6-235ENST00000495515 CCDC60Q8IWA6 550 aaPredicted RBP19.23■□□□□ 0.67
HDAC6-235ENST00000495515 SLC43A3Q8NBI5 491 aa19.23■□□□□ 0.67
HDAC6-235ENST00000495515 PCYT2Q99447 389 aa19.23■□□□□ 0.67
HDAC6-235ENST00000495515 DCDC2CA8MYV0 355 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 GNAT1P11488 350 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 CDK7P50613 346 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 RTP1P59025 263 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 SPIRE1Q08AE8 756 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 PDIA5Q14554 519 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 LRRC26Q2I0M4 334 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 ANKRD33Q7Z3H0 272 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 SESTD1Q86VW0 696 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 CKAP2LQ8IYA6 745 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 NEK9Q8TD19 979 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 FAM167AQ96KS9 214 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 TOX2Q96NM4 488 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 CFAP45Q9UL16 551 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 CIZ1Q9ULV3 898 aaPredicted RBP19.22■□□□□ 0.67
HDAC6-235ENST00000495515 ATP11BQ9Y2G3 1177 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 MAFBQ9Y5Q3 323 aaPredicted RBP19.22■□□□□ 0.67
HDAC6-235ENST00000495515 GRIN2DO15399 1336 aa19.22■□□□□ 0.67
HDAC6-235ENST00000495515 EML1O00423 815 aa19.21■□□□□ 0.67
HDAC6-235ENST00000495515 PQBP1O60828 265 aaKnown RBP19.21■□□□□ 0.67
HDAC6-235ENST00000495515 P4HBP07237 508 aaKnown RBP19.21■□□□□ 0.67
HDAC6-235ENST00000495515 MARK3P27448 753 aa19.21■□□□□ 0.67
HDAC6-235ENST00000495515 QARSP47897 775 aaKnown RBP19.21■□□□□ 0.67
HDAC6-235ENST00000495515 PSMC5P62195 406 aa19.21■□□□□ 0.67
HDAC6-235ENST00000495515 TRIM60Q495X7 471 aa19.21■□□□□ 0.67
HDAC6-235ENST00000495515 DPF3Q92784 378 aa19.21■□□□□ 0.67
HDAC6-235ENST00000495515 TRPC6Q9Y210 931 aa19.21■□□□□ 0.67
HDAC6-235ENST00000495515 NOD1Q9Y239 953 aa19.21■□□□□ 0.67
HDAC6-235ENST00000495515 CLIC4Q9Y696 253 aa19.21■□□□□ 0.67
HDAC6-235ENST00000495515 IGSF9BQ9UPX0 1349 aa19.21■□□□□ 0.67
HDAC6-235ENST00000495515 POTEB3A0JP26 581 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 POTEMA6NI47 508 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 HBP1O60381 514 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 EVI5O60447 810 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 SMIM10L2AP0DMW4 78 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 SMIM10L2BP0DMW5 78 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 CEBPZQ03701 1054 aaKnown RBP19.2■□□□□ 0.66
HDAC6-235ENST00000495515 TLE2Q04725 743 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 STK38Q15208 465 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 HAUS3Q68CZ6 603 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 POTEBQ6S5H4 581 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 ATP8B4Q8TF62 1192 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 BBXQ8WY36 941 aaPredicted RBP19.2■□□□□ 0.66
HDAC6-235ENST00000495515 USP28Q96RU2 1077 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 RNPEPQ9H4A4 650 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 NRBP2Q9NSY0 501 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 HDAC6Q9UBN7 1215 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 LRWD1Q9UFC0 647 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 GTF2IRD1Q9UHL9 959 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 ZDHHC9Q9Y397 364 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 NRCAMQ92823 1304 aa19.2■□□□□ 0.66
HDAC6-235ENST00000495515 C17orf102A2RUQ5 167 aa19.19■□□□□ 0.66
HDAC6-235ENST00000495515 RRN3P2A6NIE6 340 aa19.19■□□□□ 0.66
HDAC6-235ENST00000495515 DDIT3P35638 169 aa19.19■□□□□ 0.66
HDAC6-235ENST00000495515 NASPP49321 788 aaPredicted RBP19.19■□□□□ 0.66
HDAC6-235ENST00000495515 PPFIA1Q13136 1202 aa19.19■□□□□ 0.66
HDAC6-235ENST00000495515 PLCB4Q15147 1175 aa19.19■□□□□ 0.66
HDAC6-235ENST00000495515 FAM126BQ8IXS8 530 aa19.19■□□□□ 0.66
HDAC6-235ENST00000495515 IGSF22Q8N9C0 903 aa19.19■□□□□ 0.66
HDAC6-235ENST00000495515 EIF2AK1Q9BQI3 630 aaKnown RBP19.19■□□□□ 0.66
HDAC6-235ENST00000495515 ZSWIM4Q9H7M6 989 aa19.19■□□□□ 0.66
HDAC6-235ENST00000495515 MORC2Q9Y6X9 1032 aaPredicted RBP19.19■□□□□ 0.66
HDAC6-235ENST00000495515 DOCK5Q9H7D0 1870 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 VWA3AA6NCI4 1184 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 YEATS4O95619 227 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 OATP04181 439 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 PRKCEQ02156 737 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 SLC39A14Q15043 492 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 PTPAQ15257 358 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 FOXD4L6Q3SYB3 417 aaPredicted RBP19.18■□□□□ 0.66
HDAC6-235ENST00000495515 XKR3Q5GH77 459 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 FOXD4L3Q6VB84 417 aaPredicted RBP19.18■□□□□ 0.66
HDAC6-235ENST00000495515 BANK1Q8NDB2 785 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 AK8Q96MA6 479 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 IPO9Q96P70 1041 aaKnown RBP19.18■□□□□ 0.66
HDAC6-235ENST00000495515 LXNQ9BS40 222 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 FTOQ9C0B1 505 aaKnown RBP eCLIP19.18■□□□□ 0.66
HDAC6-235ENST00000495515 TFIP11Q9UBB9 837 aaKnown RBP19.18■□□□□ 0.66
HDAC6-235ENST00000495515 PRKAG2Q9UGJ0 569 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 NR2E3Q9Y5X4 410 aa19.18■□□□□ 0.66
HDAC6-235ENST00000495515 SCN10AQ9Y5Y9 1956 aa19.17■□□□□ 0.66
HDAC6-235ENST00000495515 KRT85P78386 507 aa19.17■□□□□ 0.66
HDAC6-235ENST00000495515 GRIK4Q16099 956 aa19.17■□□□□ 0.66
HDAC6-235ENST00000495515 PTGISQ16647 500 aa19.17■□□□□ 0.66
HDAC6-235ENST00000495515 ZNF484Q5JVG2 852 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms