RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 LSM12Q3MHD2 195 aaKnown RBP6.6□□□□□ -1.35
VPS50-219ENST00000495039 ZMAT1Q5H9K5 638 aa6.6□□□□□ -1.35
VPS50-219ENST00000495039 HABP4Q5JVS0 413 aaKnown RBP6.6□□□□□ -1.35
VPS50-219ENST00000495039 LBX2Q6XYB7 198 aa6.6□□□□□ -1.35
VPS50-219ENST00000495039 KCTD1Q719H9 257 aa6.6□□□□□ -1.35
VPS50-219ENST00000495039 DCAF4Q8WV16 495 aa6.6□□□□□ -1.35
VPS50-219ENST00000495039 FAM89AQ96GI7 184 aa6.6□□□□□ -1.35
VPS50-219ENST00000495039 NKRFO15226 690 aaKnown RBP eCLIP6.59□□□□□ -1.35
VPS50-219ENST00000495039 DPTQ07507 201 aa6.59□□□□□ -1.35
VPS50-219ENST00000495039 RNF151Q2KHN1 245 aa6.59□□□□□ -1.35
VPS50-219ENST00000495039 DPP8Q6V1X1 898 aaPredicted RBP6.59□□□□□ -1.35
VPS50-219ENST00000495039 KCNJ15Q99712 375 aa6.59□□□□□ -1.35
VPS50-219ENST00000495039 ZFYVE21Q9BQ24 234 aa6.59□□□□□ -1.35
VPS50-219ENST00000495039 TRIM8Q9BZR9 551 aa6.59□□□□□ -1.35
VPS50-219ENST00000495039 ZBTB7CA1YPR0 619 aa6.58□□□□□ -1.36
VPS50-219ENST00000495039 CDC14BO60729 498 aa6.58□□□□□ -1.36
VPS50-219ENST00000495039 TOP3AQ13472 1001 aaPredicted RBP6.58□□□□□ -1.36
VPS50-219ENST00000495039 Q6ZSN1 163 aa6.58□□□□□ -1.36
VPS50-219ENST00000495039 C1orf210Q8IVY1 113 aa6.58□□□□□ -1.36
VPS50-219ENST00000495039 CEP89Q96ST8 783 aa6.58□□□□□ -1.36
VPS50-219ENST00000495039 ESYT3A0FGR9 886 aa6.57□□□□□ -1.36
VPS50-219ENST00000495039 ETFBP38117 255 aa6.57□□□□□ -1.36
VPS50-219ENST00000495039 DGCR2P98153 550 aa6.57□□□□□ -1.36
VPS50-219ENST00000495039 HSP90AA2PQ14568 343 aaPredicted RBP6.57□□□□□ -1.36
VPS50-219ENST00000495039 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.57□□□□□ -1.36
VPS50-219ENST00000495039 SCYL1Q96KG9 808 aa6.57□□□□□ -1.36
VPS50-219ENST00000495039 OR14A2Q96R54 314 aa6.57□□□□□ -1.36
VPS50-219ENST00000495039 DPYSL5Q9BPU6 564 aa6.57□□□□□ -1.36
VPS50-219ENST00000495039 SLC39A2Q9NP94 309 aa6.57□□□□□ -1.36
VPS50-219ENST00000495039 NR2E1Q9Y466 385 aa6.57□□□□□ -1.36
VPS50-219ENST00000495039 FAM47E-STBD1D6RA91 191 aa6.56□□□□□ -1.36
VPS50-219ENST00000495039 ACOT7O00154 380 aa6.56□□□□□ -1.36
VPS50-219ENST00000495039 SOD2P04179 222 aa6.56□□□□□ -1.36
VPS50-219ENST00000495039 ETV4P43268 484 aa6.56□□□□□ -1.36
VPS50-219ENST00000495039 RRADP55042 308 aa6.56□□□□□ -1.36
VPS50-219ENST00000495039 INHBCP55103 352 aa6.56□□□□□ -1.36
VPS50-219ENST00000495039 DBPQ10586 325 aaPredicted RBP6.56□□□□□ -1.36
VPS50-219ENST00000495039 KCNT2Q6UVM3 1135 aa6.56□□□□□ -1.36
VPS50-219ENST00000495039 MAMDC4Q6UXC1 1216 aa6.56□□□□□ -1.36
VPS50-219ENST00000495039 IKZF4Q9H2S9 585 aa6.56□□□□□ -1.36
VPS50-219ENST00000495039 MSL2Q9HCI7 577 aa6.56□□□□□ -1.36
VPS50-219ENST00000495039 PLSCR1O15162 318 aa6.55□□□□□ -1.36
VPS50-219ENST00000495039 ACRV1P26436 265 aa6.55□□□□□ -1.36
VPS50-219ENST00000495039 GPR85P60893 370 aa6.55□□□□□ -1.36
VPS50-219ENST00000495039 IFNL3Q8IZI9 196 aa6.55□□□□□ -1.36
VPS50-219ENST00000495039 SGSM3Q96HU1 749 aa6.55□□□□□ -1.36
VPS50-219ENST00000495039 PLEKHG4BQ96PX9 1271 aa6.55□□□□□ -1.36
VPS50-219ENST00000495039 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.55□□□□□ -1.36
VPS50-219ENST00000495039 AARSD1Q9BTE6 412 aaKnown RBP6.55□□□□□ -1.36
VPS50-219ENST00000495039 PLA2G12BQ9BX93 195 aa6.55□□□□□ -1.36
VPS50-219ENST00000495039 C12orf65Q9H3J6 166 aaKnown RBP6.55□□□□□ -1.36
VPS50-219ENST00000495039 C1SP09871 688 aa6.54□□□□□ -1.36
VPS50-219ENST00000495039 RPS19P39019 145 aaKnown RBP6.54□□□□□ -1.36
VPS50-219ENST00000495039 DUSP8Q13202 625 aa6.54□□□□□ -1.36
VPS50-219ENST00000495039 NFYCQ13952 458 aa6.54□□□□□ -1.36
VPS50-219ENST00000495039 STYK1Q6J9G0 422 aa6.54□□□□□ -1.36
VPS50-219ENST00000495039 IL17DQ8TAD2 202 aa6.54□□□□□ -1.36
VPS50-219ENST00000495039 CACTINQ8WUQ7 758 aaKnown RBP6.54□□□□□ -1.36
VPS50-219ENST00000495039 NEU4Q8WWR8 484 aaPredicted RBP6.54□□□□□ -1.36
VPS50-219ENST00000495039 ALG1Q9BT22 464 aa6.54□□□□□ -1.36
VPS50-219ENST00000495039 CD244Q9BZW8 370 aa6.54□□□□□ -1.36
VPS50-219ENST00000495039 ARHGAP28Q9P2N2 729 aa6.54□□□□□ -1.36
VPS50-219ENST00000495039 PUF60Q9UHX1 559 aaKnown RBP6.54□□□□□ -1.36
VPS50-219ENST00000495039 IQCA1LA6NCM1 817 aa6.53□□□□□ -1.36
VPS50-219ENST00000495039 MATN2O00339 956 aa6.53□□□□□ -1.36
VPS50-219ENST00000495039 PRODHO43272 600 aa6.53□□□□□ -1.36
VPS50-219ENST00000495039 FGFR1P11362 822 aa6.53□□□□□ -1.36
VPS50-219ENST00000495039 NOLC1Q14978 699 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS50-219ENST00000495039 WDR72Q3MJ13 1102 aa6.53□□□□□ -1.36
VPS50-219ENST00000495039 DPH6Q7L8W6 267 aa6.53□□□□□ -1.36
VPS50-219ENST00000495039 NLGN4XQ8N0W4 816 aa6.53□□□□□ -1.36
VPS50-219ENST00000495039 IPPKQ9H8X2 491 aa6.53□□□□□ -1.36
VPS50-219ENST00000495039 ZNF408Q9H9D4 720 aa6.53□□□□□ -1.36
VPS50-219ENST00000495039 KIAA1522Q9P206 1035 aaPredicted RBP6.53□□□□□ -1.36
VPS50-219ENST00000495039 FBXO10Q9UK96 956 aa6.53□□□□□ -1.36
VPS50-219ENST00000495039 R3HCC1Q9Y3T6 440 aaKnown RBP6.53□□□□□ -1.36
VPS50-219ENST00000495039 A0A087X1B8 175 aa6.52□□□□□ -1.37
VPS50-219ENST00000495039 ARHGAP6O43182 974 aa6.52□□□□□ -1.37
VPS50-219ENST00000495039 HMGCRP04035 888 aa6.52□□□□□ -1.37
VPS50-219ENST00000495039 ADH4P08319 380 aa6.52□□□□□ -1.37
VPS50-219ENST00000495039 TUBA3CQ13748 450 aa6.52□□□□□ -1.37
VPS50-219ENST00000495039 GNL2Q13823 731 aaKnown RBP6.52□□□□□ -1.37
VPS50-219ENST00000495039 NTRK3Q16288 839 aa6.52□□□□□ -1.37
VPS50-219ENST00000495039 BTBD8Q5XKL5 378 aa6.52□□□□□ -1.37
VPS50-219ENST00000495039 TUBA3EQ6PEY2 450 aa6.52□□□□□ -1.37
VPS50-219ENST00000495039 ZNF808Q8N4W9 903 aaPredicted RBP6.52□□□□□ -1.37
VPS50-219ENST00000495039 ZDHHC5Q9C0B5 715 aa6.52□□□□□ -1.37
VPS50-219ENST00000495039 AURKAIP1Q9NWT8 199 aaPredicted RBP6.52□□□□□ -1.37
VPS50-219ENST00000495039 PABPC1P11940 636 aaKnown RBP6.51□□□□□ -1.37
VPS50-219ENST00000495039 PTPN1P18031 435 aaKnown RBP6.51□□□□□ -1.37
VPS50-219ENST00000495039 NSMFQ6X4W1 530 aa6.51□□□□□ -1.37
VPS50-219ENST00000495039 CXXC5Q7LFL8 322 aaKnown RBP6.51□□□□□ -1.37
VPS50-219ENST00000495039 ZNF575Q86XF7 245 aa6.51□□□□□ -1.37
VPS50-219ENST00000495039 SH3RF2Q8TEC5 729 aa6.51□□□□□ -1.37
VPS50-219ENST00000495039 DNAJA1P31689 397 aaKnown RBP6.5□□□□□ -1.37
VPS50-219ENST00000495039 KCNQ1P51787 676 aa6.5□□□□□ -1.37
VPS50-219ENST00000495039 IFRD2Q12894 506 aaPredicted RBP6.5□□□□□ -1.37
VPS50-219ENST00000495039 USP30Q70CQ3 517 aa6.5□□□□□ -1.37
VPS50-219ENST00000495039 OSBP2Q969R2 916 aa6.5□□□□□ -1.37
VPS50-219ENST00000495039 ARHGEF4Q9NR80 690 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms