RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 EIF2AK2P19525 551 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 FXR1P51114 621 aaKnown RBP eCLIP17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 GUCY1A3Q02108 690 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 SLC20A2Q08357 652 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 H2AFVQ71UI9 128 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 ADGRF4Q8IZF3 695 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 KLHL29Q96CT2 875 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 IWS1Q96ST2 819 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 PHF20Q9BVI0 1012 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 KLC4Q9NSK0 619 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 PCDHA13Q9Y5I0 950 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 FLT1P17948 1338 aa17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 BAZ2BQ9UIF8 2168 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-209ENST00000494080 E9PMD0 336 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 KRT19P08727 400 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 HNRNPH1P31943 449 aaKnown RBP17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 CHP1Q99653 195 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 ZNF341Q9BYN7 854 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 MLXIPQ9HAP2 919 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 KIF11P52732 1056 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 FAM83BQ5T0W9 1011 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 SYCE1Q8N0S2 351 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 UBL4BQ8N7F7 174 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 PCIF1Q9H4Z3 704 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 AMFRQ9UKV5 643 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 BIRC2Q13490 618 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 KSR1Q8IVT5 923 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 PPP1R14CQ8TAE6 165 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 THAP9Q9H5L6 903 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 HPCAL4Q9UM19 191 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 PLAAQ9Y263 795 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 DHX9Q08211 1270 aaKnown RBP17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 GADL1Q6ZQY3 521 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 WHAMMQ8TF30 809 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 ZNF277Q9NRM2 450 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 PCDHA6Q9UN73 950 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 PCDHA8Q9Y5H6 950 aa17.72■□□□□ 0.43
CCDC88B-209ENST00000494080 ANO9A1A5B4 782 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 KIF1CO43896 1103 aaKnown RBP17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 FGFR2P21802 821 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 HSPA1LP34931 641 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 NCAPG2Q86XI2 1143 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 FAM186BQ8IYM0 893 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 MCUR1Q96AQ8 359 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 TRIM10Q9UDY6 481 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 DCCP43146 1447 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 EIF3HO15372 352 aaKnown RBP eCLIP17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 ZRANB2O95218 330 aaKnown RBP eCLIP17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 MUM1Q2TAK8 710 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 SBK1Q52WX2 424 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 CIAPIN1Q6FI81 312 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 RASGRP2Q7LDG7 609 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 WDR11Q9BZH6 1224 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 LRRIQ4A6NIV6 560 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 ATP2A1O14983 1001 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 SMIM24O75264 130 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 LIG4P49917 911 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 YY1AP1Q9H869 796 aa17.71■□□□□ 0.43
CCDC88B-209ENST00000494080 A0A1B0GTH6 734 aa17.71■□□□□ 0.42
CCDC88B-209ENST00000494080 ZNF185O15231 689 aa17.71■□□□□ 0.42
CCDC88B-209ENST00000494080 LRRN2O75325 713 aa17.71■□□□□ 0.42
CCDC88B-209ENST00000494080 C3orf67Q6ZVT6 689 aa17.71■□□□□ 0.42
CCDC88B-209ENST00000494080 ARMC9Q7Z3E5 817 aa17.71■□□□□ 0.42
CCDC88B-209ENST00000494080 POTEB3A0JP26 581 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 POTECB2RU33 542 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 SESN3P58005 492 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 TROAPQ12815 778 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 POTEBQ6S5H4 581 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 NLRP14Q86W24 1093 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 METTL13Q8N6R0 699 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 FAM133AQ8N9E0 248 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 NACC1Q96RE7 527 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 ARHGAP4P98171 946 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 NFRKBQ6P4R8 1299 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 SULF1Q8IWU6 871 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 SLC4A9Q96Q91 983 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 RNF14Q9UBS8 474 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 LRRD1A4D1F6 860 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 RASA1P20936 1047 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 ZKSCAN8Q15776 578 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 FOXR1Q6PIV2 292 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 TRIM65Q6PJ69 517 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 RTKN2Q8IZC4 609 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 CNPY4Q8N129 248 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 POMGNT1Q8WZA1 660 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 MTMR4Q9NYA4 1195 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 CNTNAP4Q9C0A0 1308 aa17.7■□□□□ 0.42
CCDC88B-209ENST00000494080 HNRNPDLO14979 420 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 DCUN1D2Q6PH85 259 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 ADGRA1Q86SQ6 560 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 PACS2Q86VP3 889 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 HPS3Q969F9 1004 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 LRRC1Q9BTT6 524 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 COL5A2P05997 1499 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 MYO1FO00160 1098 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 SUN1O94901 812 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 DMP1Q13316 513 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 UNC13DQ70J99 1090 aa17.69■□□□□ 0.42
CCDC88B-209ENST00000494080 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms