RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 RETREG2Q8NC44 543 aa9.3□□□□□ -0.92
HDAC6-234ENST00000493923 ZBTB10Q96DT7 871 aa9.3□□□□□ -0.92
HDAC6-234ENST00000493923 PGBD1Q96JS3 809 aa9.3□□□□□ -0.92
HDAC6-234ENST00000493923 MAP3K14Q99558 947 aa9.3□□□□□ -0.92
HDAC6-234ENST00000493923 GPR20Q99678 358 aa9.3□□□□□ -0.92
HDAC6-234ENST00000493923 SLC28A3Q9HAS3 691 aa9.3□□□□□ -0.92
HDAC6-234ENST00000493923 FAM217BQ9NTX9 383 aaPredicted RBP9.3□□□□□ -0.92
HDAC6-234ENST00000493923 SIP14410 1827 aa9.3□□□□□ -0.92
HDAC6-234ENST00000493923 CNTNAP5Q8WYK1 1306 aa9.3□□□□□ -0.92
HDAC6-234ENST00000493923 CTIFO43310 598 aaKnown RBP9.29□□□□□ -0.92
HDAC6-234ENST00000493923 PPFIA4O75335 1185 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 SMIM10L2AP0DMW4 78 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 SMIM10L2BP0DMW5 78 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 ITGB5P18084 799 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 RFC2P35250 354 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 PTK7Q13308 1070 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 NOLC1Q14978 699 aaKnown RBP eCLIP9.29□□□□□ -0.92
HDAC6-234ENST00000493923 BMP2KLQ5H9B9 411 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 FAM117BQ6P1L5 589 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.29□□□□□ -0.92
HDAC6-234ENST00000493923 MICU3Q86XE3 530 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 MICALL1Q8N3F8 863 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 SAMD3Q8N6K7 520 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 SPRYD3Q8NCJ5 442 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 CTCFLQ8NI51 663 aaPredicted RBP9.29□□□□□ -0.92
HDAC6-234ENST00000493923 CAGE1Q8TC20 777 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 AFAP1L1Q8TED9 768 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 RRP36Q96EU6 259 aaKnown RBP9.29□□□□□ -0.92
HDAC6-234ENST00000493923 TMEM87BQ96K49 555 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 GAS2L1Q99501 681 aaPredicted RBP9.29□□□□□ -0.92
HDAC6-234ENST00000493923 RBSNQ9H1K0 784 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 MTIF3Q9H2K0 278 aaKnown RBP9.29□□□□□ -0.92
HDAC6-234ENST00000493923 RNPEPQ9H4A4 650 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 MLXIPQ9HAP2 919 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 SETD4Q9NVD3 440 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 MAP3K20Q9NYL2 800 aaKnown RBP9.29□□□□□ -0.92
HDAC6-234ENST00000493923 PKD2L1Q9P0L9 805 aa9.29□□□□□ -0.92
HDAC6-234ENST00000493923 GSTTP1A0A1W2PQM5 241 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 CCDC69A6NI79 296 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 VGLL3A8MV65 326 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 H3BRB1 525 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 PIK3CDO00329 1044 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 LPXNO60711 386 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 PFKMP08237 780 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 TGFB3P10600 412 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 KCNA2P16389 499 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 CDC27P30260 824 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 LIFRP42702 1097 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 RNF20Q5VTR2 975 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 PCNX4Q63HM2 1172 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 WWC2Q6AWC2 1192 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 RUFY4Q6ZNE9 571 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 SERINC5Q86VE9 423 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 SGMS1Q86VZ5 419 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 IFNLR1Q8IU57 520 aaPredicted RBP9.28□□□□□ -0.92
HDAC6-234ENST00000493923 FANCBQ8NB91 859 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 SMARCC2Q8TAQ2 1214 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 CYP2W1Q8TAV3 490 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 ARNTL2Q8WYA1 636 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 ARID3AQ99856 593 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 TUT1Q9H6E5 874 aaKnown RBP9.28□□□□□ -0.92
HDAC6-234ENST00000493923 MTCH2Q9Y6C9 303 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 LOXHD1Q8IVV2 1947 aa9.28□□□□□ -0.92
HDAC6-234ENST00000493923 C17orf102A2RUQ5 167 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 GOLGA6L6A8MZA4 724 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 FIBPO43427 364 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 LGR5O75473 907 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 CTSHP09668 335 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 ACTN1P12814 892 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 SMARCA1P28370 1054 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 KIF5BP33176 963 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 THPOP40225 353 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 ADAM17P78536 824 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 TFF2Q03403 129 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 CAVIN1Q6NZI2 390 aaKnown RBP9.27□□□□□ -0.93
HDAC6-234ENST00000493923 CNKSR3Q6P9H4 555 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 KCNV1Q6PIU1 500 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 APOA5Q6Q788 366 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 METTL7BQ6UX53 244 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 KRT222Q8N1A0 295 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 DBF4BQ8NFT6 615 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 SECISBP2LQ93073 1101 aaKnown RBP9.27□□□□□ -0.93
HDAC6-234ENST00000493923 NECAB3Q96P71 396 aaPredicted RBP9.27□□□□□ -0.93
HDAC6-234ENST00000493923 UIMC1Q96RL1 719 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 SLC9A7Q96T83 725 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 PCYT2Q99447 389 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 MTA3Q9BTC8 594 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 KATNAL1Q9BW62 490 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 TSPY26PQ9H489 355 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 PSTPIP2Q9H939 334 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 BRMS1Q9HCU9 246 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 SCUBE2Q9NQ36 999 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 TMEM260Q9NX78 707 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 UBIAD1Q9Y5Z9 338 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.27□□□□□ -0.93
HDAC6-234ENST00000493923 MORC2Q9Y6X9 1032 aaPredicted RBP9.27□□□□□ -0.93
HDAC6-234ENST00000493923 ATG2AQ2TAZ0 1938 aa9.27□□□□□ -0.93
HDAC6-234ENST00000493923 TLL1O43897 1013 aa9.26□□□□□ -0.93
HDAC6-234ENST00000493923 PPFIA3O75145 1194 aa9.26□□□□□ -0.93
HDAC6-234ENST00000493923 GRB10Q13322 594 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms