RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 JAKMIP3Q5VZ66 844 aa12.2□□□□□ -0.46
COL6A3-214ENST00000493608 RUFY3Q7L099 469 aa12.2□□□□□ -0.46
COL6A3-214ENST00000493608 MYLIPQ8WY64 445 aa12.2□□□□□ -0.46
COL6A3-214ENST00000493608 TIFAQ96CG3 184 aa12.2□□□□□ -0.46
COL6A3-214ENST00000493608 UPF3BQ9BZI7 483 aaKnown RBP12.2□□□□□ -0.46
COL6A3-214ENST00000493608 RNPEPQ9H4A4 650 aa12.2□□□□□ -0.46
COL6A3-214ENST00000493608 NCOA5Q9HCD5 579 aaKnown RBP12.2□□□□□ -0.46
COL6A3-214ENST00000493608 BARHL2Q9NY43 387 aa12.2□□□□□ -0.46
COL6A3-214ENST00000493608 UBIAD1Q9Y5Z9 338 aa12.2□□□□□ -0.46
COL6A3-214ENST00000493608 SLC4A7Q9Y6M7 1214 aa12.2□□□□□ -0.46
COL6A3-214ENST00000493608 TANC1Q9C0D5 1861 aa12.2□□□□□ -0.46
COL6A3-214ENST00000493608 CCDC196A0A1B0GTZ2 297 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 SMIM10L2AP0DMW4 78 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 SMIM10L2BP0DMW5 78 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 CKBP12277 381 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 SCG2P13521 617 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 MYOGP15173 224 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 SELPP16109 830 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 KCNA2P16389 499 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 PDIA3P30101 505 aaKnown RBP12.19□□□□□ -0.46
COL6A3-214ENST00000493608 RCAN1P53805 252 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 MTMR1Q13613 665 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 GPNMBQ14956 572 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 GRIN2CQ14957 1233 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 PKN1Q16512 942 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 PFKFB3Q16875 520 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-214ENST00000493608 TJAP1Q5JTD0 557 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 CCDC155Q8N6L0 562 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 SLC17A8Q8NDX2 589 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 GPRASP2Q96D09 838 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 UIMC1Q96RL1 719 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 SENP7Q9BQF6 1050 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 SLC26A6Q9BXS9 759 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 AGXT2Q9BYV1 514 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 MTIF3Q9H2K0 278 aaKnown RBP12.19□□□□□ -0.46
COL6A3-214ENST00000493608 NKX2-4Q9H2Z4 354 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 ZNF576Q9H609 170 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 EHMT1Q9H9B1 1298 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 JADE2Q9NQC1 790 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 SETD4Q9NVD3 440 aa12.19□□□□□ -0.46
COL6A3-214ENST00000493608 CDH23Q9H251 3354 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 GSTTP1A0A1W2PQM5 241 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 C17orf102A2RUQ5 167 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 TREHO43280 583 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 PRPF3O43395 683 aaKnown RBP12.18□□□□□ -0.46
COL6A3-214ENST00000493608 CENPBP07199 599 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-214ENST00000493608 ARP10275 920 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 TCF7P36402 384 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-214ENST00000493608 AKAP17AQ02040 695 aaKnown RBP12.18□□□□□ -0.46
COL6A3-214ENST00000493608 STK3Q13188 491 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 PTK7Q13308 1070 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 NTRK3Q16288 839 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 TRIM71Q2Q1W2 868 aaKnown RBP12.18□□□□□ -0.46
COL6A3-214ENST00000493608 ZNF618Q5T7W0 954 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 ERICH6BQ5W0A0 696 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 PPP1R18Q6NYC8 613 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 LRRC8DQ7L1W4 858 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 FBXL16Q8N461 479 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 CAGE1Q8TC20 777 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 AFAP1L1Q8TED9 768 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 ATP6V0A1Q93050 837 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 CDHR1Q96JP9 859 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 MXRA8Q9BRK3 442 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 ANO3Q9BYT9 981 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 MSRAQ9UJ68 235 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 YBX2Q9Y2T7 364 aaKnown RBP12.18□□□□□ -0.46
COL6A3-214ENST00000493608 CYP46A1Q9Y6A2 500 aa12.18□□□□□ -0.46
COL6A3-214ENST00000493608 hCG_1984214I3L0E3 225 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 NBNO60934 754 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 DTNBO60941 627 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 FOSP01100 380 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-214ENST00000493608 PFKMP08237 780 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 ACTN1P12814 892 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 ATP2A2P16615 1042 aaKnown RBP12.17□□□□□ -0.46
COL6A3-214ENST00000493608 MARK3P27448 753 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 RFC2P35250 354 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 ZNF76P36508 570 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 THPOP40225 353 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 CLK2P49760 499 aaKnown RBP12.17□□□□□ -0.46
COL6A3-214ENST00000493608 TCTN1Q2MV58 587 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 SWT1Q5T5J6 900 aaKnown RBP12.17□□□□□ -0.46
COL6A3-214ENST00000493608 ZNF713Q8N859 430 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-214ENST00000493608 GIMAP8Q8ND71 665 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-214ENST00000493608 RASGRP4Q8TDF6 673 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 SEPT1Q8WYJ6 367 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 KCNH7Q9NS40 1196 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 PDRG1Q9NUG6 133 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 PTPRSQ13332 1948 aa12.17□□□□□ -0.46
COL6A3-214ENST00000493608 EPB41L2O43491 1005 aaKnown RBP12.16□□□□□ -0.46
COL6A3-214ENST00000493608 IFNAR1P17181 557 aa12.16□□□□□ -0.46
COL6A3-214ENST00000493608 ARHGAP4P98171 946 aa12.16□□□□□ -0.46
COL6A3-214ENST00000493608 CEP55Q53EZ4 464 aa12.16□□□□□ -0.46
COL6A3-214ENST00000493608 TRAF7Q6Q0C0 670 aa12.16□□□□□ -0.46
COL6A3-214ENST00000493608 TMCO2Q7Z6W1 182 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-214ENST00000493608 SERINC5Q86VE9 423 aa12.16□□□□□ -0.46
COL6A3-214ENST00000493608 OSBPL7Q9BZF2 842 aa12.16□□□□□ -0.46
COL6A3-214ENST00000493608 TM6SF1Q9BZW5 370 aa12.16□□□□□ -0.46
COL6A3-214ENST00000493608 PRDM12Q9H4Q4 367 aa12.16□□□□□ -0.46
COL6A3-214ENST00000493608 C6orf50Q9HD87 102 aa12.16□□□□□ -0.46
COL6A3-214ENST00000493608 VPS54Q9P1Q0 977 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms