RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CETN3O15182 167 aa23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 ITGB5P18084 799 aa23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 NBPF12Q5TAG4 269 aaPredicted RBP23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 KRT26Q7Z3Y9 468 aa23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 MCF2L2Q86YR7 1114 aa23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 CPXCR1Q8N123 301 aa23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 NEK11Q8NG66 645 aa23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 CD2APQ9Y5K6 639 aa23.3■■□□□ 1.32
CCDC88B-208ENST00000492980 PRPF6O94906 941 aaKnown RBP23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 H2AFXP16104 143 aaPredicted RBP23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 VCAM1P19320 739 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 NR2F2P24468 414 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 MTMR2Q13614 643 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 EPHA7Q15375 998 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 C1orf186Q6ZWK4 172 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 NAPGQ99747 312 aaPredicted RBP23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 EDEM3Q9BZQ6 932 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 RAVER2Q9HCJ3 691 aaKnown RBP23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 WRAP73Q9P2S5 460 aaPredicted RBP23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 GUCA1BQ9UMX6 200 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 TFR2Q9UP52 801 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 PARP14Q460N5 1801 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 ZBTB39O15060 712 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 ALAS1P13196 640 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 GAP43P17677 238 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 CCDC125Q86Z20 511 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 IL31RAQ8NI17 732 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 RIT2Q99578 217 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 SGIP1Q9BQI5 828 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 POLD4Q9HCU8 107 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 OLFML3Q9NRN5 406 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 ARHGAP20Q9P2F6 1191 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 CDC23Q9UJX2 597 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 PPP1R9AQ9ULJ8 1098 aa23.29■■□□□ 1.32
CCDC88B-208ENST00000492980 LRRC53A6NM62 1247 aa23.28■■□□□ 1.32
CCDC88B-208ENST00000492980 PDXKO00764 312 aa23.28■■□□□ 1.32
CCDC88B-208ENST00000492980 FLOT1O75955 427 aa23.28■■□□□ 1.32
CCDC88B-208ENST00000492980 PLEKP08567 350 aaPredicted RBP23.28■■□□□ 1.32
CCDC88B-208ENST00000492980 BCRP11274 1271 aa23.28■■□□□ 1.32
CCDC88B-208ENST00000492980 MUM1L1Q5H9M0 696 aa23.28■■□□□ 1.32
CCDC88B-208ENST00000492980 KIAA1328Q86T90 577 aa23.28■■□□□ 1.32
CCDC88B-208ENST00000492980 FAM184BQ9ULE4 1060 aa23.28■■□□□ 1.32
CCDC88B-208ENST00000492980 TUBB2AQ13885 445 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 CCDC122Q5T0U0 273 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 PDXDC1Q6P996 788 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 RSRC2Q7L4I2 434 aaKnown RBP23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 RRAGAQ7L523 313 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 JAKMIP2Q96AA8 810 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 NACC1Q96RE7 527 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 TUBB2BQ9BVA1 445 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 FRMPD4Q14CM0 1322 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 LOXHD1Q8IVV2 1947 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 CALUO43852 315 aaPredicted RBP23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 IPO7O95373 1038 aaKnown RBP23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 GCNT3O95395 438 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 ARHGAP27Q6ZUM4 889 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 NIPA1Q7RTP0 329 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 CCDC42Q96M95 316 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 RPAP3Q9H6T3 665 aaPredicted RBP23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 TYW1Q9NV66 732 aaKnown RBP23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 ASTN1O14525 1302 aa23.27■■□□□ 1.32
CCDC88B-208ENST00000492980 RCCD1A6NED2 376 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 ZNF263O14978 683 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 NOL4O94818 638 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 FAM13AO94988 1023 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 SYTL5Q8TDW5 730 aaPredicted RBP23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 KCNH7Q9NS40 1196 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 HOMER2Q9NSB8 354 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 ZNF541Q9H0D2 1346 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 SFI1A8K8P3 1242 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 USP14P54578 494 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 DCAF15Q66K64 600 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 CACNA2D4Q7Z3S7 1137 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 LXNQ9BS40 222 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 LSM14BQ9BX40 385 aaKnown RBP23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 LACRTQ9GZZ8 138 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 CEP72Q9P209 647 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 UBIAD1Q9Y5Z9 338 aa23.26■■□□□ 1.31
CCDC88B-208ENST00000492980 CYP27A1Q02318 531 aa23.25■■□□□ 1.31
CCDC88B-208ENST00000492980 PCNX4Q63HM2 1172 aa23.25■■□□□ 1.31
CCDC88B-208ENST00000492980 FRMD5Q7Z6J6 570 aa23.25■■□□□ 1.31
CCDC88B-208ENST00000492980 SCYL3Q8IZE3 742 aa23.25■■□□□ 1.31
CCDC88B-208ENST00000492980 MAP3K20Q9NYL2 800 aaKnown RBP23.25■■□□□ 1.31
CCDC88B-208ENST00000492980 ZNF112Q9UJU3 913 aa23.25■■□□□ 1.31
CCDC88B-208ENST00000492980 DDX39AO00148 427 aaKnown RBP23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 EIF3DO15371 548 aaKnown RBP eCLIP23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 KRT86O43790 486 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 SPP2Q13103 211 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 R3HDM1Q15032 1099 aaKnown RBP23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 TKFCQ3LXA3 575 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 SRGAP1Q7Z6B7 1085 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 MYCT1Q8N699 235 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 NEK9Q8TD19 979 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 FBXO41Q8TF61 875 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 PKD2L1Q9P0L9 805 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 DHX15O43143 795 aaKnown RBP23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 EIF4A3P38919 411 aaKnown RBP23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 VAV2P52735 878 aa23.24■■□□□ 1.31
CCDC88B-208ENST00000492980 MRPS9P82933 396 aaKnown RBP23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms