RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SLC7A14Q8TBB6 771 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 CLEC4DQ8WXI8 215 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 APPBP2Q92624 585 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 SPATA25Q9BR10 227 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 CELF4Q9BZC1 486 aaKnown RBP3.15□□□□□ -1.91
HMGB1-208ENST00000490788 CABP5Q9NP86 173 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 DLL4Q9NR61 685 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 FTSJ1Q9UET6 329 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 SRPK3Q9UPE1 567 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 COQ6Q9Y2Z9 468 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 SYNJ1O43426 1573 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 EIF4G3O43432 1585 aaKnown RBP3.15□□□□□ -1.91
HMGB1-208ENST00000490788 FANCD2Q9BXW9 1451 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 SMARCA4P51532 1647 aa3.15□□□□□ -1.91
HMGB1-208ENST00000490788 CLASP1Q7Z460 1538 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 A0A1B0GTL3 188 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 TCRBV16S1A1N1A0A5B0 115 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 ESYT3A0FGR9 886 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 DDX3XO00571 662 aaKnown RBP eCLIP3.14□□□□□ -1.91
HMGB1-208ENST00000490788 WNT9AO14904 365 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 FOXD2O60548 495 aaPredicted RBP3.14□□□□□ -1.91
HMGB1-208ENST00000490788 CDC45O75419 566 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 ASLP04424 464 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 PTPN1P18031 435 aaKnown RBP3.14□□□□□ -1.91
HMGB1-208ENST00000490788 GLRBP48167 497 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 RGL3Q3MIN7 710 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 VWA3BQ502W6 1294 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 HABP4Q5JVS0 413 aaKnown RBP3.14□□□□□ -1.91
HMGB1-208ENST00000490788 FAM26FQ5R3K3 315 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 NT5DC1Q5TFE4 455 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 MCTP2Q6DN12 878 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 DPP8Q6V1X1 898 aaPredicted RBP3.14□□□□□ -1.91
HMGB1-208ENST00000490788 GSTCDQ8NEC7 633 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 FEZF2Q8TBJ5 459 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 LCORQ96JN0 433 aaPredicted RBP3.14□□□□□ -1.91
HMGB1-208ENST00000490788 KCNC2Q96PR1 638 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 SYT3Q9BQG1 590 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 TMEM168Q9H0V1 697 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 PIF1Q9H611 641 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 BARX1Q9HBU1 254 aaPredicted RBP3.14□□□□□ -1.91
HMGB1-208ENST00000490788 TMEM260Q9NX78 707 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 ARHGAP20Q9P2F6 1191 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 CBLCQ9ULV8 474 aa3.14□□□□□ -1.91
HMGB1-208ENST00000490788 URB2Q14146 1524 aaKnown RBP3.14□□□□□ -1.91
HMGB1-208ENST00000490788 SLC12A8A0AV02 714 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 SCDO00767 359 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 KCNK3O14649 394 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 PPP1R12AO14974 1030 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-208ENST00000490788 KCNQ2O43526 872 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 CLASP2O75122 1294 aaKnown RBP3.13□□□□□ -1.91
HMGB1-208ENST00000490788 KRT37O76014 449 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 CLSTN1O94985 981 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 CKMP06732 381 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 IL13P35225 146 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 EPHA5P54756 1037 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 JAM2P57087 298 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 LACTBP83111 547 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-208ENST00000490788 PFKPQ01813 784 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 SQSTM1Q13501 440 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 ARHGAP44Q17R89 818 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 SKIDA1Q1XH10 827 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 UBXN11Q5T124 520 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 CD276Q5ZPR3 534 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 PKN3Q6P5Z2 889 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 C16orf86Q6ZW13 317 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 FGD2Q7Z6J4 655 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 NOP9Q86U38 636 aaKnown RBP3.13□□□□□ -1.91
HMGB1-208ENST00000490788 IGSF22Q8N9C0 903 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 SYT8Q8NBV8 401 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 IGDCC4Q8TDY8 1250 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 ADAMTS17Q8TE56 1095 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 SLKQ9H2G2 1235 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-208ENST00000490788 FANCLQ9NW38 375 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 SPATA6Q9NWH7 488 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-208ENST00000490788 HSPBP1Q9NZL4 362 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 SAMD15Q9P1V8 674 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 ZFP69BQ9UJL9 534 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 ZKSCAN5Q9Y2L8 839 aa3.13□□□□□ -1.91
HMGB1-208ENST00000490788 TMA7Q9Y2S6 64 aaKnown RBP3.13□□□□□ -1.91
HMGB1-208ENST00000490788 AQRO60306 1485 aaKnown RBP eCLIP3.13□□□□□ -1.912e-9■■■■□ 19.5
HMGB1-208ENST00000490788 TTBK1Q5TCY1 1321 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-208ENST00000490788 DIP2BQ9P265 1576 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 PTPRMP28827 1452 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 SNAPC4Q5SXM2 1469 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 MROH6A6NGR9 719 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 OTOL1A6NHN0 477 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-208ENST00000490788 ZNF839A8K0R7 811 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 H0Y858 1186 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 ZNF561-AS1K7EIQ3 104 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 MAN2B1O00754 1011 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 SUV39H1O43463 412 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 AMY2AP04746 511 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 CHGBP05060 677 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 SYN1P17600 705 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 AMY2BP19961 511 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 PTGS1P23219 599 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 HSPA1LP34931 641 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 NEK4P51957 841 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 IRF9Q00978 393 aa3.12□□□□□ -1.91
HMGB1-208ENST00000490788 DBPQ10586 325 aaPredicted RBP3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms