RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 TEKT3Q9BXF9 490 aa19.62■□□□□ 0.73
MDC1-206ENST00000489540 RRN3P2A6NIE6 340 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 WDR64B1ANS9 1081 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 CCNT1O60563 726 aaKnown RBP19.61■□□□□ 0.73
MDC1-206ENST00000489540 PARNO95453 639 aaKnown RBP19.61■□□□□ 0.73
MDC1-206ENST00000489540 PSAPP07602 524 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 PFKMP08237 780 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 SELPP16109 830 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 ADAM17P78536 824 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 PPFIA1Q13136 1202 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 C9orf50Q5SZB4 431 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 SWSAP1Q6NVH7 229 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 PSRC1Q6PGN9 363 aaPredicted RBP19.61■□□□□ 0.73
MDC1-206ENST00000489540 C16orf59Q7L2K0 433 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 DHX38Q92620 1227 aaKnown RBP19.61■□□□□ 0.73
MDC1-206ENST00000489540 SCLYQ96I15 445 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 FAM20AQ96MK3 541 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 ZNF302Q9NR11 478 aa19.61■□□□□ 0.73
MDC1-206ENST00000489540 TREHO43280 583 aa19.6■□□□□ 0.73
MDC1-206ENST00000489540 PSMD10O75832 226 aa19.6■□□□□ 0.73
MDC1-206ENST00000489540 CKBP12277 381 aa19.6■□□□□ 0.73
MDC1-206ENST00000489540 SFNP31947 248 aa19.6■□□□□ 0.73
MDC1-206ENST00000489540 GUCY1B3Q02153 619 aa19.6■□□□□ 0.73
MDC1-206ENST00000489540 PLCB4Q15147 1175 aa19.6■□□□□ 0.73
MDC1-206ENST00000489540 TMEM240Q5SV17 173 aa19.6■□□□□ 0.73
MDC1-206ENST00000489540 ETNPPLQ8TBG4 499 aa19.6■□□□□ 0.73
MDC1-206ENST00000489540 LMBR1Q8WVP7 490 aa19.6■□□□□ 0.73
MDC1-206ENST00000489540 FOXP1Q9H334 677 aaPredicted RBP19.6■□□□□ 0.73
MDC1-206ENST00000489540 SAMM50Q9Y512 469 aa19.6■□□□□ 0.73
MDC1-206ENST00000489540 TRIOBPQ9H2D6 2365 aa19.6■□□□□ 0.73
MDC1-206ENST00000489540 TBX3O15119 743 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 SLC37A4O43826 429 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 FGBP02675 491 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 ACRP10323 421 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 FXR1P51114 621 aaKnown RBP eCLIP19.59■□□□□ 0.73
MDC1-206ENST00000489540 JAK3P52333 1124 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 GRIK4Q16099 956 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 TRIM71Q2Q1W2 868 aaKnown RBP19.59■□□□□ 0.73
MDC1-206ENST00000489540 PDXDC2PQ6P474 469 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 ZNF365Q70YC5 407 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 CCDC60Q8IWA6 550 aaPredicted RBP19.59■□□□□ 0.73
MDC1-206ENST00000489540 RDM1Q8NG50 284 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 RNPC3Q96LT9 517 aaKnown RBP19.59■□□□□ 0.73
MDC1-206ENST00000489540 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.59■□□□□ 0.734e-7■□□□□ 9.9
MDC1-206ENST00000489540 KCNMB3Q9NPA1 279 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 DISC1Q9NRI5 854 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 TRPC6Q9Y210 931 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.59■□□□□ 0.73
MDC1-206ENST00000489540 MAFBQ9Y5Q3 323 aaPredicted RBP19.59■□□□□ 0.73
MDC1-206ENST00000489540 POTEB3A0JP26 581 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 MARCH6O60337 910 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 HBP1O60381 514 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 CAND2O75155 1236 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 INSRRP14616 1297 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 TAF2Q6P1X5 1199 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 POTEBQ6S5H4 581 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 LRRC8DQ7L1W4 858 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 UNC45AQ9H3U1 944 aa19.59■□□□□ 0.73
MDC1-206ENST00000489540 LTBP2Q14767 1821 aa19.58■□□□□ 0.73
MDC1-206ENST00000489540 FAM205CA6NFA0 338 aa19.58■□□□□ 0.72
MDC1-206ENST00000489540 BAG4O95429 457 aaKnown RBP19.58■□□□□ 0.72
MDC1-206ENST00000489540 THPOP40225 353 aa19.58■□□□□ 0.72
MDC1-206ENST00000489540 GNL2Q13823 731 aaKnown RBP19.58■□□□□ 0.72
MDC1-206ENST00000489540 CKAP2LQ8IYA6 745 aa19.58■□□□□ 0.72
MDC1-206ENST00000489540 ATP8B4Q8TF62 1192 aa19.58■□□□□ 0.72
MDC1-206ENST00000489540 GJA10Q969M2 543 aa19.58■□□□□ 0.72
MDC1-206ENST00000489540 MTIF3Q9H2K0 278 aaKnown RBP19.58■□□□□ 0.72
MDC1-206ENST00000489540 GABBR1Q9UBS5 961 aa19.58■□□□□ 0.72
MDC1-206ENST00000489540 MBLAC1A4D2B0 266 aaPredicted RBP19.57■□□□□ 0.72
MDC1-206ENST00000489540 MARCH8Q5T0T0 291 aa19.57■□□□□ 0.72
MDC1-206ENST00000489540 ZNF618Q5T7W0 954 aa19.57■□□□□ 0.72
MDC1-206ENST00000489540 B3GNT9Q6UX72 402 aa19.57■□□□□ 0.72
MDC1-206ENST00000489540 MIER3Q7Z3K6 550 aa19.57■□□□□ 0.72
MDC1-206ENST00000489540 DEFB128Q7Z7B8 93 aa19.57■□□□□ 0.72
MDC1-206ENST00000489540 RPAINQ86UA6 219 aa19.57■□□□□ 0.72
MDC1-206ENST00000489540 SLFN12Q8IYM2 578 aa19.57■□□□□ 0.72
MDC1-206ENST00000489540 HERVK_113Q902F9 699 aa19.57■□□□□ 0.72
MDC1-206ENST00000489540 WNT8BQ93098 351 aa19.57■□□□□ 0.72
MDC1-206ENST00000489540 TUBE1Q9UJT0 475 aa19.57■□□□□ 0.72
MDC1-206ENST00000489540 SMC3Q9UQE7 1217 aa19.57■□□□□ 0.72
MDC1-206ENST00000489540 RANBP2P49792 3224 aaKnown RBP19.57■□□□□ 0.72
MDC1-206ENST00000489540 RSPH10B2B2RC85 870 aa19.56■□□□□ 0.72
MDC1-206ENST00000489540 CHMP2AO43633 222 aa19.56■□□□□ 0.72
MDC1-206ENST00000489540 RPLP2P05387 115 aaKnown RBP19.56■□□□□ 0.72
MDC1-206ENST00000489540 RSPH10BP0C881 870 aa19.56■□□□□ 0.72
MDC1-206ENST00000489540 IGBP1P78318 339 aa19.56■□□□□ 0.72
MDC1-206ENST00000489540 ZNF484Q5JVG2 852 aa19.56■□□□□ 0.72
MDC1-206ENST00000489540 RSPH3Q86UC2 560 aa19.56■□□□□ 0.72
MDC1-206ENST00000489540 BBXQ8WY36 941 aaPredicted RBP19.56■□□□□ 0.72
MDC1-206ENST00000489540 FTOQ9C0B1 505 aaKnown RBP eCLIP19.56■□□□□ 0.72
MDC1-206ENST00000489540 ACTN1P12814 892 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 ATP4AP20648 1035 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 GJB2P29033 226 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 PPP2R5CQ13362 524 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 RASIP1Q5U651 963 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 TRAF7Q6Q0C0 670 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 POTEDQ86YR6 584 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 NOSTRINQ8IVI9 506 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 HAS1Q92839 578 aa19.55■□□□□ 0.72
MDC1-206ENST00000489540 VWCEQ96DN2 955 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms