RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TUBA3CQ13748 450 aa5.75□□□□□ -1.49
SMC4-220ENST00000488017 NFYCQ13952 458 aa5.75□□□□□ -1.49
SMC4-220ENST00000488017 TNNI3KQ59H18 835 aa5.75□□□□□ -1.49
SMC4-220ENST00000488017 HABP4Q5JVS0 413 aaKnown RBP5.75□□□□□ -1.49
SMC4-220ENST00000488017 TUBA3EQ6PEY2 450 aa5.75□□□□□ -1.49
SMC4-220ENST00000488017 DPP8Q6V1X1 898 aaPredicted RBP5.75□□□□□ -1.49
SMC4-220ENST00000488017 RBM12BQ8IXT5 1001 aaKnown RBP5.75□□□□□ -1.49
SMC4-220ENST00000488017 CRAMP1Q96RY5 1269 aa5.75□□□□□ -1.49
SMC4-220ENST00000488017 EPN3Q9H201 632 aa5.75□□□□□ -1.49
SMC4-220ENST00000488017 ZNF703Q9H7S9 590 aaPredicted RBP5.75□□□□□ -1.49
SMC4-220ENST00000488017 ACTR10Q9NZ32 417 aa5.75□□□□□ -1.49
SMC4-220ENST00000488017 PPARGC1AQ9UBK2 798 aaKnown RBP5.75□□□□□ -1.49
SMC4-220ENST00000488017 MSCO60682 206 aa5.74□□□□□ -1.49
SMC4-220ENST00000488017 LTFP02788 710 aa5.74□□□□□ -1.49
SMC4-220ENST00000488017 MAKP20794 623 aa5.74□□□□□ -1.49
SMC4-220ENST00000488017 DNAJA1P31689 397 aaKnown RBP5.74□□□□□ -1.49
SMC4-220ENST00000488017 MRGPRGQ86SM5 289 aa5.74□□□□□ -1.49
SMC4-220ENST00000488017 NT5DC4Q86YG4 428 aa5.74□□□□□ -1.49
SMC4-220ENST00000488017 MICAL1Q8TDZ2 1067 aa5.74□□□□□ -1.49
SMC4-220ENST00000488017 ZNF483Q8TF39 744 aaPredicted RBP5.74□□□□□ -1.49
SMC4-220ENST00000488017 OR14A2Q96R54 314 aa5.74□□□□□ -1.49
SMC4-220ENST00000488017 DPYSL5Q9BPU6 564 aa5.74□□□□□ -1.49
SMC4-220ENST00000488017 NR2E1Q9Y466 385 aa5.74□□□□□ -1.49
SMC4-220ENST00000488017 TELO2Q9Y4R8 837 aa5.74□□□□□ -1.49
SMC4-220ENST00000488017 SMAD7O15105 426 aaKnown RBP5.73□□□□□ -1.49
SMC4-220ENST00000488017 GNAT1P11488 350 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 GRK2P25098 689 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 GRK3P35626 688 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 ETV4P43268 484 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 CSRP2Q16527 193 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 KIZQ2M2Z5 673 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 FNDC7Q5VTL7 733 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 LARP1BQ659C4 914 aaKnown RBP5.73□□□□□ -1.49
SMC4-220ENST00000488017 DPY19L2P1Q6NXN4 242 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 ZG16BQ96DA0 208 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 PRRX2Q99811 253 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 PHF20Q9BVI0 1012 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 PLA2G12BQ9BX93 195 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 DSEQ9UL01 958 aa5.73□□□□□ -1.49
SMC4-220ENST00000488017 ESYT3A0FGR9 886 aa5.72□□□□□ -1.49
SMC4-220ENST00000488017 B2RBV5 119 aa5.72□□□□□ -1.49
SMC4-220ENST00000488017 AGRPO00253 132 aa5.72□□□□□ -1.49
SMC4-220ENST00000488017 MATN2O00339 956 aa5.72□□□□□ -1.49
SMC4-220ENST00000488017 ARHGAP6O43182 974 aa5.72□□□□□ -1.49
SMC4-220ENST00000488017 LBX2Q6XYB7 198 aa5.72□□□□□ -1.49
SMC4-220ENST00000488017 KCTD1Q719H9 257 aa5.72□□□□□ -1.49
SMC4-220ENST00000488017 ZNF808Q8N4W9 903 aaPredicted RBP5.72□□□□□ -1.49
SMC4-220ENST00000488017 LARP4BQ92615 738 aaKnown RBP5.72□□□□□ -1.49
SMC4-220ENST00000488017 ZFYVE21Q9BQ24 234 aa5.72□□□□□ -1.49
SMC4-220ENST00000488017 C12orf65Q9H3J6 166 aaKnown RBP5.72□□□□□ -1.49
SMC4-220ENST00000488017 MMRN2Q9H8L6 949 aa5.72□□□□□ -1.49
SMC4-220ENST00000488017 ACOT7O00154 380 aa5.71□□□□□ -1.5
SMC4-220ENST00000488017 NKRFO15226 690 aaKnown RBP eCLIP5.71□□□□□ -1.5
SMC4-220ENST00000488017 DDAH1O94760 285 aa5.71□□□□□ -1.5
SMC4-220ENST00000488017 COL6A2P12110 1019 aa5.71□□□□□ -1.5
SMC4-220ENST00000488017 HIBADHP31937 336 aaKnown RBP5.71□□□□□ -1.5
SMC4-220ENST00000488017 GRIA2P42262 883 aa5.71□□□□□ -1.5
SMC4-220ENST00000488017 RRADP55042 308 aa5.71□□□□□ -1.5
SMC4-220ENST00000488017 PPP2R2AP63151 447 aa5.71□□□□□ -1.5
SMC4-220ENST00000488017 HDLBPQ00341 1268 aaKnown RBP5.71□□□□□ -1.5
SMC4-220ENST00000488017 FXNQ16595 210 aa5.71□□□□□ -1.5
SMC4-220ENST00000488017 MRM1Q6IN84 353 aaKnown RBP5.71□□□□□ -1.5
SMC4-220ENST00000488017 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.71□□□□□ -1.5
SMC4-220ENST00000488017 EEPD1Q7L9B9 569 aa5.71□□□□□ -1.5
SMC4-220ENST00000488017 DCAF4Q8WV16 495 aa5.71□□□□□ -1.5
SMC4-220ENST00000488017 PUF60Q9UHX1 559 aaKnown RBP5.71□□□□□ -1.5
SMC4-220ENST00000488017 FBXO10Q9UK96 956 aa5.71□□□□□ -1.5
SMC4-220ENST00000488017 KRTAP10-9P60411 292 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 DBPQ10586 325 aaPredicted RBP5.7□□□□□ -1.5
SMC4-220ENST00000488017 FOXL1Q12952 345 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 NOLC1Q14978 699 aaKnown RBP eCLIP5.7□□□□□ -1.5
SMC4-220ENST00000488017 PCSK4Q6UW60 755 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 USP53Q70EK8 1073 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 CXXC5Q7LFL8 322 aaKnown RBP5.7□□□□□ -1.5
SMC4-220ENST00000488017 AGAP2Q99490 1192 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 IER2Q9BTL4 223 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 ZDHHC5Q9C0B5 715 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 TGIF2Q9GZN2 237 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 NELFAQ9H3P2 528 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 TLR9Q9NR96 1032 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 INPP5FQ9Y2H2 1132 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 DMRT1Q9Y5R6 373 aa5.7□□□□□ -1.5
SMC4-220ENST00000488017 DLX3O60479 287 aa5.69□□□□□ -1.5
SMC4-220ENST00000488017 PEX11BO96011 259 aa5.69□□□□□ -1.5
SMC4-220ENST00000488017 ATF4P18848 351 aaPredicted RBP5.69□□□□□ -1.5
SMC4-220ENST00000488017 HHEXQ03014 270 aa5.69□□□□□ -1.5
SMC4-220ENST00000488017 ADGRE4PQ86SQ3 457 aa5.69□□□□□ -1.5
SMC4-220ENST00000488017 CFHR4Q92496 578 aa5.69□□□□□ -1.5
SMC4-220ENST00000488017 KCNJ15Q99712 375 aa5.69□□□□□ -1.5
SMC4-220ENST00000488017 SLC39A2Q9NP94 309 aa5.69□□□□□ -1.5
SMC4-220ENST00000488017 PLA2G3Q9NZ20 509 aa5.69□□□□□ -1.5
SMC4-220ENST00000488017 A0A1W2PQU0 124 aa5.68□□□□□ -1.5
SMC4-220ENST00000488017 MSX2P35548 267 aaPredicted RBP5.68□□□□□ -1.5
SMC4-220ENST00000488017 GPR85P60893 370 aa5.68□□□□□ -1.5
SMC4-220ENST00000488017 TBR1Q16650 682 aa5.68□□□□□ -1.5
SMC4-220ENST00000488017 SLC10A6Q3KNW5 377 aa5.68□□□□□ -1.5
SMC4-220ENST00000488017 WDR72Q3MJ13 1102 aa5.68□□□□□ -1.5
SMC4-220ENST00000488017 USP30Q70CQ3 517 aa5.68□□□□□ -1.5
SMC4-220ENST00000488017 ULK2Q8IYT8 1036 aa5.68□□□□□ -1.5
SMC4-220ENST00000488017 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms