RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 UBA5Q9GZZ9 404 aa10.13□□□□□ -0.79
COL12A1-208ENST00000486533 PDGFCQ9NRA1 345 aa10.13□□□□□ -0.79
COL12A1-208ENST00000486533 TMEM39AQ9NV64 488 aa10.13□□□□□ -0.79
COL12A1-208ENST00000486533 IFNKQ9P0W0 207 aa10.13□□□□□ -0.79
COL12A1-208ENST00000486533 HPSEQ9Y251 543 aa10.13□□□□□ -0.79
COL12A1-208ENST00000486533 MYH6P13533 1939 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 DEXIO95424 95 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 IFNAR1P17181 557 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 SMPD1P17405 629 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 ALDH5A1P51649 535 aaPredicted RBP10.12□□□□□ -0.79
COL12A1-208ENST00000486533 FANCCQ00597 558 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 AKAP17AQ02040 695 aaKnown RBP10.12□□□□□ -0.79
COL12A1-208ENST00000486533 CDC37Q16543 378 aaPredicted RBP10.12□□□□□ -0.79
COL12A1-208ENST00000486533 FSCN1Q16658 493 aaKnown RBP10.12□□□□□ -0.79
COL12A1-208ENST00000486533 DPCR1Q3MIW9 517 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 AXDND1Q5T1B0 1012 aaPredicted RBP10.12□□□□□ -0.79
COL12A1-208ENST00000486533 IFIT1BQ5T764 474 aaKnown RBP10.12□□□□□ -0.79
COL12A1-208ENST00000486533 TAF3Q5VWG9 929 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 Q7L0L9 218 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 ANKRD33Q7Z3H0 272 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 MLKLQ8NB16 471 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 CNNM3Q8NE01 707 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 CLEC4DQ8WXI8 215 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 TOX2Q96NM4 488 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 AP5M1Q9H0R1 490 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 FOXP1Q9H334 677 aaPredicted RBP10.12□□□□□ -0.79
COL12A1-208ENST00000486533 BRMS1Q9HCU9 246 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 VTA1Q9NP79 307 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 MROH7Q68CQ1 1323 aa10.12□□□□□ -0.79
COL12A1-208ENST00000486533 EYSQ5T1H1 3165 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 A0A0U1RQG5 324 aaPredicted RBP10.11□□□□□ -0.79
COL12A1-208ENST00000486533 IFIT3O14879 490 aaKnown RBP10.11□□□□□ -0.79
COL12A1-208ENST00000486533 KIAA0355O15063 1070 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 DYNC1LI2O43237 492 aaPredicted RBP10.11□□□□□ -0.79
COL12A1-208ENST00000486533 PARP1P09874 1014 aaKnown RBP10.11□□□□□ -0.79
COL12A1-208ENST00000486533 ITGB8P26012 769 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 UBASH3AP57075 661 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 RPS6P62753 249 aaKnown RBP10.11□□□□□ -0.79
COL12A1-208ENST00000486533 TUBB4BP68371 445 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 FAAP100Q0VG06 881 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 SHHQ15465 462 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 RTN1Q16799 776 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 ASPRV1Q53RT3 343 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 C9orf50Q5SZB4 431 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 IQSEC1Q6DN90 963 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 TAPT1Q6NXT6 567 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 CXCL17Q6UXB2 119 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 KRBA2Q6ZNG9 492 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 HOMER1Q86YM7 354 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 ADGRF4Q8IZF3 695 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 ANKS1AQ92625 1134 aa10.11□□□□□ -0.79
COL12A1-208ENST00000486533 MPHOSPH6Q99547 160 aaKnown RBP10.11□□□□□ -0.79
COL12A1-208ENST00000486533 GNEQ9Y223 722 aaKnown RBP10.11□□□□□ -0.79
COL12A1-208ENST00000486533 UNC80Q8N2C7 3258 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 ARHGAP6O43182 974 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 ZEB2O60315 1214 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 CALM1P0DP23 149 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 CALM2P0DP24 149 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 CALM3P0DP25 149 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 PDE4DQ08499 809 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 WTAPQ15007 396 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 TMEM63BQ5T3F8 832 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 ADGRD1Q6QNK2 874 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 MICU3Q86XE3 530 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 NOSTRINQ8IVI9 506 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 KRT222Q8N1A0 295 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 MORC4Q8TE76 937 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 WDR11Q9BZH6 1224 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 VAT1LQ9HCJ6 419 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 ABCB11O95342 1321 aa10.1□□□□□ -0.79
COL12A1-208ENST00000486533 LOC102724159A0A0B4J2E5 919 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 KIF28PB7ZC32 967 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 ARVCFO00192 962 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 MMP1P03956 469 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 FPGSQ05932 587 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 MFSD10Q14728 455 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 PWP2Q15269 919 aaKnown RBP10.09□□□□□ -0.79
COL12A1-208ENST00000486533 DUSP28Q4G0W2 176 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 CYB5R4Q7L1T6 521 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 DNERQ8NFT8 737 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 SMARCE1Q969G3 411 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 PPP1R13BQ96KQ4 1090 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 RNPC3Q96LT9 517 aaKnown RBP10.09□□□□□ -0.79
COL12A1-208ENST00000486533 SLC26A6Q9BXS9 759 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 L2HGDHQ9H9P8 463 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 LY9Q9HBG7 655 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 RBM28Q9NW13 759 aaKnown RBP10.09□□□□□ -0.79
COL12A1-208ENST00000486533 KCNH3Q9ULD8 1083 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 B4DLN1 442 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 TK2O00142 265 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 TLR3O15455 904 aaKnown RBP10.09□□□□□ -0.79
COL12A1-208ENST00000486533 CABYRO75952 493 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 TIMP1P01033 207 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 ERCC5P28715 1186 aaPredicted RBP10.09□□□□□ -0.79
COL12A1-208ENST00000486533 PSEN2P49810 448 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 CDK7P50613 346 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 MRPL12P52815 198 aaKnown RBP10.09□□□□□ -0.79
COL12A1-208ENST00000486533 NKX3-2P78367 333 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 CBX1P83916 185 aa10.09□□□□□ -0.79
COL12A1-208ENST00000486533 BMS1Q14692 1282 aaKnown RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms