RNA–Protein interactions for RNA: ENST00000486254.3

PKP4-213, Transcript of plakophilin 4, humanhuman

TSL 2

Gene PKP4, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-213ENST00000486254 CCDC170Q8IYT3 715 aa13.23□□□□□ -0.29
PKP4-213ENST00000486254 ZNF397Q8NF99 534 aaPredicted RBP13.23□□□□□ -0.29
PKP4-213ENST00000486254 GPRASP2Q96D09 838 aa13.23□□□□□ -0.29
PKP4-213ENST00000486254 TRERF1Q96PN7 1200 aa13.23□□□□□ -0.29
PKP4-213ENST00000486254 MAP7D2Q96T17 732 aa13.23□□□□□ -0.29
PKP4-213ENST00000486254 PDCD2LQ9BRP1 358 aa13.23□□□□□ -0.29
PKP4-213ENST00000486254 TEX13BQ9BXU2 312 aa13.23□□□□□ -0.29
PKP4-213ENST00000486254 NUCKS1Q9H1E3 243 aaKnown RBP13.23□□□□□ -0.29
PKP4-213ENST00000486254 AGO4Q9HCK5 861 aaKnown RBP13.23□□□□□ -0.29
PKP4-213ENST00000486254 PXMP2Q9NR77 195 aa13.23□□□□□ -0.29
PKP4-213ENST00000486254 TYW1Q9NV66 732 aaKnown RBP13.23□□□□□ -0.29
PKP4-213ENST00000486254 TMOD4Q9NZQ9 345 aa13.23□□□□□ -0.29
PKP4-213ENST00000486254 ZNF214Q9UL59 606 aaPredicted RBP13.23□□□□□ -0.29
PKP4-213ENST00000486254 AFG3L2Q9Y4W6 797 aa13.23□□□□□ -0.29
PKP4-213ENST00000486254 OTOFQ9HC10 1997 aa13.23□□□□□ -0.29
PKP4-213ENST00000486254 POLR2AP24928 1970 aaKnown RBP13.22□□□□□ -0.29
PKP4-213ENST00000486254 CETN3O15182 167 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 CALUO43852 315 aaPredicted RBP13.22□□□□□ -0.29
PKP4-213ENST00000486254 P4HBP07237 508 aaKnown RBP13.22□□□□□ -0.29
PKP4-213ENST00000486254 RPL13P26373 211 aaKnown RBP13.22□□□□□ -0.29
PKP4-213ENST00000486254 SFNP31947 248 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 JAK3P52333 1124 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 HIRAP54198 1017 aaPredicted RBP13.22□□□□□ -0.29
PKP4-213ENST00000486254 ERVK-24P63145 666 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 MRPS9P82933 396 aaKnown RBP13.22□□□□□ -0.29
PKP4-213ENST00000486254 KRT76Q01546 638 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 CYP4A11Q02928 519 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 TUBB2AQ13885 445 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 MUM1L1Q5H9M0 696 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 CATSPERGQ6ZRH7 1159 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 FRMD5Q7Z6J6 570 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 SFR1Q86XK3 245 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 GLIS3Q8NEA6 775 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 ATG4CQ96DT6 458 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 DYDC2Q96IM9 177 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 SENP7Q9BQF6 1050 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 LXNQ9BS40 222 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 TUBB2BQ9BVA1 445 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 RUSC1Q9BVN2 902 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 ZSWIM4Q9H7M6 989 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 PARVGQ9HBI0 331 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 RNF146Q9NTX7 359 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 HOXC10Q9NYD6 342 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 RGL1Q9NZL6 768 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 PLAGL2Q9UPG8 496 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 ZHX2Q9Y6X8 837 aa13.22□□□□□ -0.29
PKP4-213ENST00000486254 TRAF5O00463 557 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 MYH11P35749 1972 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 MTMR1Q13613 665 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 MYBPC2Q14324 1141 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 SYT10Q6XYQ8 523 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 MIER3Q7Z3K6 550 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 CPXCR1Q8N123 301 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 SLC17A8Q8NDX2 589 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 IL31RAQ8NI17 732 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 GOLGA5Q8TBA6 731 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 CPLX3Q8WVH0 158 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 SYN2Q92777 582 aaPredicted RBP13.21□□□□□ -0.29
PKP4-213ENST00000486254 ZKSCAN4Q969J2 545 aaPredicted RBP13.21□□□□□ -0.29
PKP4-213ENST00000486254 CDHR1Q96JP9 859 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 INPP4AQ96PE3 977 aaPredicted RBP13.21□□□□□ -0.29
PKP4-213ENST00000486254 MKNK1Q9BUB5 465 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 METTL14Q9HCE5 456 aaKnown RBP13.21□□□□□ -0.29
PKP4-213ENST00000486254 ZNHIT6Q9NWK9 470 aaKnown RBP13.21□□□□□ -0.29
PKP4-213ENST00000486254 DNAI1Q9UI46 699 aa13.21□□□□□ -0.29
PKP4-213ENST00000486254 ZC3H4Q9UPT8 1303 aaKnown RBP13.21□□□□□ -0.29
PKP4-213ENST00000486254 RASSF10A6NK89 507 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 PES1O00541 588 aaKnown RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 FAM13AO94988 1023 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 CCND2P30279 289 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 EPS15P42566 896 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 HMGCS2P54868 508 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 LRRC41Q15345 812 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.2□□□□□ -0.3
PKP4-213ENST00000486254 TPH2Q8IWU9 490 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 C4orf19Q8IY42 314 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 ERO1AQ96HE7 468 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 L3MBTL3Q96JM7 780 aaPredicted RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 RMDN3Q96TC7 470 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 FGFBP2Q9BYJ0 223 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 SCAF8Q9UPN6 1271 aaKnown RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 EPN1Q9Y6I3 576 aaPredicted RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 NFASCO94856 1347 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 NPHP3-ACAD11A0A0J9YXS1 232 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 GTPBP10A4D1E9 387 aaKnown RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 RNF225M0QZC1 329 aaPredicted RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 USP2O75604 605 aaPredicted RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 NDUFA10O95299 355 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 SLU7O95391 586 aaKnown RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 CYLC1P35663 651 aaPredicted RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 QARSP47897 775 aaKnown RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 UBXN2AP68543 259 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 KRT83P78385 493 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 MAP3K9P80192 1104 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 ITGB3BPQ13352 177 aaPredicted RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 CTTNQ14247 550 aaKnown RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 CCDC40Q4G0X9 1142 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 ZNF746Q6NUN9 644 aaPredicted RBP13.2□□□□□ -0.3
PKP4-213ENST00000486254 WDR59Q6PJI9 974 aa13.2□□□□□ -0.3
PKP4-213ENST00000486254 SLC30A10Q6XR72 485 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms