RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 MTERF2Q49AM1 385 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 HHIPL2Q6UWX4 724 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 CCDC105Q8IYK2 499 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 FAM133AQ8N9E0 248 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 TEX33O43247 280 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 NDUFA10O95299 355 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 MYCP01106 439 aaPredicted RBP11.99□□□□□ -0.49
HDAC6-228ENST00000486227 TFDP1Q14186 410 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 ADGRA1Q86SQ6 560 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 RAD54LQ92698 747 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 POLLQ9UGP5 575 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 POTEFA5A3E0 1075 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 POTEIP0CG38 1075 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 ATP1A2P50993 1020 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 PPP4CP60510 307 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 MTMR3Q13615 1198 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 POTEGQ6S5H5 508 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 POTEEQ6S8J3 1075 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 FAM20AQ96MK3 541 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 FUCA2Q9BTY2 467 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 CNOT7Q9UIV1 285 aaKnown RBP11.99□□□□□ -0.49
HDAC6-228ENST00000486227 SHPRHQ149N8 1683 aa11.99□□□□□ -0.49
HDAC6-228ENST00000486227 TNS2Q63HR2 1409 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 PPARDQ03181 441 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 ADAT2Q7Z6V5 191 aaKnown RBP11.98□□□□□ -0.49
HDAC6-228ENST00000486227 SFR1Q86XK3 245 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 TSNARE1Q96NA8 513 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 IQCGQ9H095 443 aaKnown RBP11.98□□□□□ -0.49
HDAC6-228ENST00000486227 FEM1BQ9UK73 627 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 CNTNAP5Q8WYK1 1306 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-228ENST00000486227 PVALEFA0A1B0GWK0 134 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 NDUFB10O96000 172 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 NEDD9Q14511 834 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 PNMA8AQ86V59 439 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-228ENST00000486227 CACNA2D3Q8IZS8 1091 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 FBF1Q8TES7 1133 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 NHEJ1Q9H9Q4 299 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-228ENST00000486227 GCNT4Q9P109 453 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 VIMP08670 466 aaKnown RBP11.98□□□□□ -0.49
HDAC6-228ENST00000486227 PDHBP11177 359 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 PPP2R5AQ15172 486 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 MICALL2Q8IY33 904 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 ABI1Q8IZP0 508 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 PPANQ9NQ55 473 aaKnown RBP11.98□□□□□ -0.49
HDAC6-228ENST00000486227 MRFAP1Q9Y605 127 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 BZW2Q9Y6E2 419 aaKnown RBP11.98□□□□□ -0.49
HDAC6-228ENST00000486227 KRIT1O00522 736 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 TMEM191BP0C7N4 346 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 FERP16591 822 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 PDE6CP51160 858 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 YWHAEP62258 255 aaKnown RBP11.98□□□□□ -0.49
HDAC6-228ENST00000486227 GRIN1Q05586 938 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 PDXDC2PQ6P474 469 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 EP400NLQ6ZTU2 488 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 CROCCP2Q86T23 111 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 PRPF38AQ8NAV1 312 aaKnown RBP11.98□□□□□ -0.49
HDAC6-228ENST00000486227 NT5C1BQ96P26 610 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 PSMD1Q99460 953 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 TMEM206Q9H813 350 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 L2HGDHQ9H9P8 463 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 KCNK9Q9NPC2 374 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 PSD3Q9NYI0 1048 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 BAIAP2L1Q9UHR4 511 aa11.98□□□□□ -0.49
HDAC6-228ENST00000486227 LGALS16A8MUM7 142 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 MIS18BP1Q6P0N0 1132 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 PPP1R14CQ8TAE6 165 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 INO80B-WBP1J3KQ70 363 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 GFPT2O94808 682 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 DPEP1P16444 411 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 ORC2Q13416 577 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-228ENST00000486227 MTMR1Q13613 665 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 RPAINQ86UA6 219 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 OTUD5Q96G74 571 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 INO80BQ9C086 356 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-228ENST00000486227 ABCB11O95342 1321 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 ATP11AP98196 1134 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 COASYQ13057 564 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 RASA3Q14644 834 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 SNCBQ16143 134 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 STYK1Q6J9G0 422 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 COL23A1Q86Y22 540 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-228ENST00000486227 DPF2Q92785 391 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 DYDC2Q96IM9 177 aa11.97□□□□□ -0.49
HDAC6-228ENST00000486227 STXBP3O00186 592 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 FCER1AP12319 257 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 EPHB4P54760 987 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 PEX3P56589 373 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 SNRNP48Q6IEG0 339 aaKnown RBP11.96□□□□□ -0.49
HDAC6-228ENST00000486227 EXOC8Q8IYI6 725 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 SCAF8Q9UPN6 1271 aaKnown RBP11.96□□□□□ -0.49
HDAC6-228ENST00000486227 GOLGA8IPA6NC78 632 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 GOLGA8JA6NMD2 632 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 TNNC2P02585 160 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 H2AFXP16104 143 aaPredicted RBP11.96□□□□□ -0.49
HDAC6-228ENST00000486227 HOXD10P28358 340 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 GUCY2FP51841 1108 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 PRELPP51888 382 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 C6orf163Q5TEZ5 329 aa11.96□□□□□ -0.49
HDAC6-228ENST00000486227 NAA35Q5VZE5 725 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms