RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 PTGDRQ13258 359 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 PPP2R5CQ13362 524 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 PDIA5Q14554 519 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 MFSD10Q14728 455 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 KIAA0753Q2KHM9 967 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 TRIM60Q495X7 471 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 FAM47CQ5HY64 1035 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 ARL6IP4Q66PJ3 421 aaKnown RBP9.3□□□□□ -0.92
SF3A1-208ENST00000485618 FAM109BQ6ICB4 259 aaPredicted RBP9.3□□□□□ -0.92
SF3A1-208ENST00000485618 PDXDC2PQ6P474 469 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 OTUD6AQ7L8S5 288 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 MIER3Q7Z3K6 550 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 CCDC155Q8N6L0 562 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 NEK9Q8TD19 979 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 LENG9Q96B70 501 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 TTC12Q9H892 705 aaPredicted RBP9.3□□□□□ -0.92
SF3A1-208ENST00000485618 KCNMB3Q9NPA1 279 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 ZNF302Q9NR11 478 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 MTMR6Q9Y217 621 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 MYH7BA7E2Y1 1941 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 DNAH12Q6ZR08 3092 aa9.3□□□□□ -0.92
SF3A1-208ENST00000485618 GSTTP1A0A1W2PQM5 241 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 CTAGE5O15320 804 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 DHX15O43143 795 aaKnown RBP9.29□□□□□ -0.92
SF3A1-208ENST00000485618 CHMP2AO43633 222 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 SLC37A4O43826 429 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 LGR5O75473 907 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 ATG7O95352 703 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 P4HBP07237 508 aaKnown RBP9.29□□□□□ -0.92
SF3A1-208ENST00000485618 QARSP47897 775 aaKnown RBP9.29□□□□□ -0.92
SF3A1-208ENST00000485618 PSMC5P62195 406 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 EPHA7Q15375 998 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 SF3A1Q15459 793 aaKnown RBP9.29□□□□□ -0.92
SF3A1-208ENST00000485618 NBPF20Q3BBV1 942 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 EARS2Q5JPH6 523 aaKnown RBP9.29□□□□□ -0.92
SF3A1-208ENST00000485618 TMEM63BQ5T3F8 832 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 HAUS3Q68CZ6 603 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 SWSAP1Q6NVH7 229 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 ABHD15Q6UXT9 468 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 ANKRD33Q7Z3H0 272 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 RSPH3Q86UC2 560 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 FERMT3Q86UX7 667 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 SESTD1Q86VW0 696 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 POTEDQ86YR6 584 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 ZNF710Q8N1W2 664 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 AFAP1L1Q8TED9 768 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 MTMR9Q96QG7 549 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 JPH2Q9BR39 696 aaPredicted RBP9.29□□□□□ -0.92
SF3A1-208ENST00000485618 TRPC6Q9Y210 931 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 PPME1Q9Y570 386 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 EMSYQ7Z589 1322 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 NRCAMQ92823 1304 aa9.29□□□□□ -0.92
SF3A1-208ENST00000485618 POTEB3A0JP26 581 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 MYADML2A6NDP7 307 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 FAM205CA6NFA0 338 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 KIF28PB7ZC32 967 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 SLC26A4O43511 780 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 HBP1O60381 514 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 PQBP1O60828 265 aaKnown RBP9.28□□□□□ -0.92
SF3A1-208ENST00000485618 ZNF286BP0CG31 522 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 MUTP22033 750 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 TECP42680 631 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 BFSP2Q13515 415 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 SHHQ15465 462 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 ZNF484Q5JVG2 852 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 C9orf50Q5SZB4 431 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 KRT79Q5XKE5 535 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 NCAPH2Q6IBW4 605 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 POTEBQ6S5H4 581 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 KCTD17Q8N5Z5 321 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 RETREG2Q8NC44 543 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 BBXQ8WY36 941 aaPredicted RBP9.28□□□□□ -0.92
SF3A1-208ENST00000485618 HAS1Q92839 578 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 BADQ92934 168 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 AK8Q96MA6 479 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 CCDC43Q96MW1 224 aaKnown RBP9.28□□□□□ -0.92
SF3A1-208ENST00000485618 C16orf70Q9BSU1 422 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 UNC45AQ9H3U1 944 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 ZSWIM4Q9H7M6 989 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 PDLIM7Q9NR12 457 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.28□□□□□ -0.92
SF3A1-208ENST00000485618 GABBR1Q9UBS5 961 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 LRWD1Q9UFC0 647 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 CIZ1Q9ULV3 898 aaPredicted RBP9.28□□□□□ -0.92
SF3A1-208ENST00000485618 LRRC37A2A6NM11 1700 aa9.28□□□□□ -0.92
SF3A1-208ENST00000485618 IGKV6D-21A0A0A0MT36 114 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 C17orf102A2RUQ5 167 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 MAGEB2O15479 319 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 EDIL3O43854 480 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 PARNO95453 639 aaKnown RBP9.27□□□□□ -0.93
SF3A1-208ENST00000485618 CCNE2O96020 404 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 F13A1P00488 732 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 XRCC6P12956 609 aaKnown RBP eCLIP9.27□□□□□ -0.93
SF3A1-208ENST00000485618 TMOD1P28289 359 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 TXLNAP40222 546 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 DNM2P50570 870 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 CDK7P50613 346 aa9.27□□□□□ -0.93
SF3A1-208ENST00000485618 TOB1P50616 345 aaPredicted RBP9.27□□□□□ -0.93
SF3A1-208ENST00000485618 FXR2P51116 673 aaKnown RBP eCLIP9.27□□□□□ -0.93
SF3A1-208ENST00000485618 CDC42EP1Q00587 391 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms