RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TRIB2Q92519 343 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 APBA2Q99767 749 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 NACAP1Q9BZK3 213 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 ADAM19Q9H013 955 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 SAP130Q9H0E3 1048 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 PORCNQ9H237 461 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 RWDD1Q9H446 243 aaPredicted RBP8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 VCPKMTQ9H867 229 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 MKNK2Q9HBH9 465 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 ZNF287Q9HBT7 754 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 PAK6Q9NQU5 681 aaPredicted RBP8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 FRMPD3Q5JV73 1810 aa8.1□□□□□ -1.11
CCDC88A-213ENST00000476903 RPTORQ8N122 1335 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 WDR46O15213 610 aaKnown RBP8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 SMNDC1O75940 238 aaKnown RBP eCLIP8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 FLOT1O75955 427 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 FARP2O94887 1054 aaPredicted RBP8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 EEF2P13639 858 aaKnown RBP8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 ZKSCAN1P17029 563 aaPredicted RBP8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 ATP2B2Q01814 1243 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 KIAA1755Q5JYT7 1200 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 WDR78Q5VTH9 848 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 ANKRD34AQ69YU3 496 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 SPICE1Q8N0Z3 855 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 MB21D1Q8N884 522 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 USP6NLQ92738 828 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 EVI5LQ96CN4 794 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 DEFB118Q96PH6 123 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 HTATIP2Q9BUP3 242 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 PBX4Q9BYU1 374 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 EPB41L4AQ9HCS5 686 aaPredicted RBP8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 BTBD7Q9P203 1132 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 STAP2Q9UGK3 403 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 IVNS1ABPQ9Y6Y0 642 aa8.09□□□□□ -1.11
CCDC88A-213ENST00000476903 PLXNA1Q9UIW2 1896 aa8.09□□□□□ -1.12
CCDC88A-213ENST00000476903 ALPK3Q96L96 1907 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 SLC15A5A6NIM6 579 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 SLC3A2P08195 630 aaKnown RBP8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 PDE1AP54750 535 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 MAP3K21Q5TCX8 1036 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 UBE2Q1Q7Z7E8 422 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 IFNL3Q8IZI9 196 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 ZNF444Q8N0Y2 327 aaPredicted RBP8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 SHISA5Q8N114 240 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 STK11IPQ8N1F8 1099 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 CEP120Q8N960 986 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 DPF3Q92784 378 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 MFSD14AQ96MC6 490 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 POP1Q99575 1024 aaKnown RBP8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 SPATC1LQ9H0A9 340 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 NAPBQ9H115 298 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 KCNF1Q9H3M0 494 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 VRTNQ9H8Y1 702 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 CCDC39Q9UFE4 941 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 HIF3AQ9Y2N7 669 aa8.08□□□□□ -1.12
CCDC88A-213ENST00000476903 STRNO43815 780 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 PRNPP04156 253 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 F13BP05160 661 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 ITGB5P18084 799 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 PDE4BQ07343 736 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 GRB14Q14449 540 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 PLS1Q14651 629 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 TICAM2Q86XR7 235 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 SMC5Q8IY18 1101 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 SHCBP1Q8NEM2 672 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 ATG4CQ96DT6 458 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 SEC62Q99442 399 aaKnown RBP8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 MOV10L1Q9BXT6 1211 aaKnown RBP8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 LNPKQ9C0E8 428 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 NYAP2Q9P242 653 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 CEP290O15078 2479 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 PLIN4Q96Q06 1357 aa8.07□□□□□ -1.12
CCDC88A-213ENST00000476903 IGKV6D-41A0A0C4DH26 115 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 TNFRSF10BO14763 440 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 PRDM1O75626 825 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 SLC25A27O95847 323 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 HOXC6P09630 235 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 TSPY3P0CV98 308 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 TSPY8P0CW00 308 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 ERCC3P19447 782 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 ADORA2AP29274 412 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 PPARAQ07869 468 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 CACNB2Q08289 660 aaPredicted RBP8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 CCL14Q16627 93 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 FAM83BQ5T0W9 1011 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 MFSD14CQ5VZR4 134 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 CCDC129Q6ZRS4 1044 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 NECAB2Q7Z6G3 386 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 DPP9Q86TI2 863 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 NCAPG2Q86XI2 1143 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 ABRAQ8N0Z2 381 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 EXOC6Q8TAG9 804 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 ZMYND15Q9H091 742 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 MROH8Q9H579 483 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 HELLSQ9NRZ9 838 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 SLC5A4Q9NY91 659 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 CLIP2Q9UDT6 1046 aa8.06□□□□□ -1.12
CCDC88A-213ENST00000476903 PPP1R9AQ9ULJ8 1098 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms