RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 LRRIQ4A6NIV6 560 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 VSNL1P62760 191 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 TMPRSS15P98073 1019 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 LETM2Q2VYF4 491 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 SV2BQ7L1I2 683 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 STK32CQ86UX6 486 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 ANKRD36BP1Q96IX9 119 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 CHID1Q9BWS9 393 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 CEP44Q9C0F1 390 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 CYP4F11Q9HBI6 524 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 SPATA7Q9P0W8 599 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 ANKIB1Q9P2G1 1089 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 FOSL1P15407 271 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 ATP5JP18859 108 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 CDH3P22223 829 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 SCTRP47872 440 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 GGT6Q6P531 493 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 C1orf228Q6PIY5 440 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 MFSD6Q6ZSS7 791 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 VPS37AQ8NEZ2 397 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 SH3KBP1Q96B97 665 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 NSMCE4AQ9NXX6 385 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 RWDD2AQ9UIY3 292 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 GGT7Q9UJ14 662 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 USTQ9Y2C2 406 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 CFAP99D6REC4 459 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 CCDC188H7C350 402 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 ATP9AO75110 1047 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 IL10P22301 178 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 CXCR5P32302 372 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 COPS2P61201 443 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 CLEC4GQ6UXB4 293 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 CDC37L1Q7L3B6 337 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 DHX32Q7L7V1 743 aaKnown RBP9.63□□□□□ -0.87
COL6A3-210ENST00000473258 ATL2Q8NHH9 583 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 INPP5DQ92835 1189 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 PHF21AQ96BD5 680 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 LBHD1Q9BQE6 289 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-210ENST00000473258 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-210ENST00000473258 EXOC7Q9UPT5 735 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 L3MBTL1Q9Y468 752 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 MINK1Q8N4C8 1332 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-210ENST00000473258 A6NJR5 290 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 SPDYE16A6NNV3 312 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-210ENST00000473258 RASA4BC9J798 803 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 ZBTB39O15060 712 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 RASA4O43374 803 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 HNRNPRO43390 633 aaKnown RBP9.63□□□□□ -0.87
COL6A3-210ENST00000473258 MPP3Q13368 585 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 RRS1Q15050 365 aaKnown RBP9.63□□□□□ -0.87
COL6A3-210ENST00000473258 B3GNT6Q6ZMB0 384 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 LPCAT2Q7L5N7 544 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 EPM2AIP1Q7L775 607 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-210ENST00000473258 PIGOQ8TEQ8 1089 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 PHACTR1Q9C0D0 580 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 CHPF2Q9P2E5 772 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 ANAPC5Q9UJX4 755 aa9.63□□□□□ -0.87
COL6A3-210ENST00000473258 CNOT3O75175 753 aaKnown RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 BRAFP15056 766 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 RFC5P40937 340 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 STAT1P42224 750 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 MAP3K12Q12852 859 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 PNOCQ13519 176 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 HABP4Q5JVS0 413 aaKnown RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 SYCP2LQ5T4T6 812 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 NGLY1Q96IV0 654 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 CYLDQ9NQC7 956 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 DDX56Q9NY93 547 aaKnown RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 HBS1LQ9Y450 684 aaKnown RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 C1orf232A0A0U1RR37 186 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 PHF20L1A8MW92 1017 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 B4DLN1 442 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 ORC4O43929 436 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 MRPL12P52815 198 aaKnown RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 USP4Q13107 963 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 BFSP2Q13515 415 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 TMTC4Q5T4D3 741 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 PCNX4Q63HM2 1172 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 APOA5Q6Q788 366 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 GSPT2Q8IYD1 628 aaKnown RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 LPIN2Q92539 896 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 LENG1Q96BZ8 264 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 PANX2Q96RD6 677 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 RPRD1BQ9NQG5 326 aaKnown RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 MRPL39Q9NYK5 338 aaKnown RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 ZNF806P0C7X5 589 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 CHMLP26374 656 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 RASSF7Q02833 373 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 CCSAPQ6IQ19 270 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 TTC33Q6PID6 262 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-210ENST00000473258 TSHZ1Q6ZSZ6 1077 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 SERPINB13Q9UIV8 391 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 MID2Q9UJV3 735 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 PTPN22Q9Y2R2 807 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 TRIM43BA6NCK2 446 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 MATN2O00339 956 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 TRIM24O15164 1050 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 APOA4P06727 396 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 ABCB4P21439 1286 aa9.62□□□□□ -0.87
COL6A3-210ENST00000473258 IFNA8P32881 189 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms