RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 CERKQ8TCT0 537 aa23.18■■□□□ 1.3
COL18A1-207ENST00000473212 PIK3R5Q8WYR1 880 aa23.18■■□□□ 1.3
COL18A1-207ENST00000473212 RBM17Q96I25 401 aaKnown RBP23.18■■□□□ 1.3
COL18A1-207ENST00000473212 IKZF4Q9H2S9 585 aa23.18■■□□□ 1.3
COL18A1-207ENST00000473212 PCDHGC5Q9Y5F6 944 aa23.18■■□□□ 1.3
COL18A1-207ENST00000473212 PPARDQ03181 441 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 QRICH1Q2TAL8 776 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 ICE2Q659A1 982 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 CERS3Q8IU89 383 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 CEP63Q96MT8 703 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 INPP4AQ96PE3 977 aaPredicted RBP23.17■■□□□ 1.3
COL18A1-207ENST00000473212 DNAJC18Q9H819 358 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 EMILIN3Q9NT22 766 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 GRID2IPA4D2P6 1211 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 NDUFAB1O14561 156 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 ZEB2O60315 1214 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 ERLIN2O94905 339 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 SLC9A1P19634 815 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 HOXA7P31268 230 aaPredicted RBP23.17■■□□□ 1.3
COL18A1-207ENST00000473212 ADAM9Q13443 819 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 RNPC3Q96LT9 517 aaKnown RBP23.17■■□□□ 1.3
COL18A1-207ENST00000473212 KCNQ5Q9NR82 932 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 BMP2KQ9NSY1 1161 aaPredicted RBP23.17■■□□□ 1.3
COL18A1-207ENST00000473212 ATF5Q9Y2D1 282 aaPredicted RBP23.17■■□□□ 1.3
COL18A1-207ENST00000473212 FOCADQ5VW36 1801 aa23.17■■□□□ 1.3
COL18A1-207ENST00000473212 MRPL12P52815 198 aaKnown RBP23.16■■□□□ 1.3
COL18A1-207ENST00000473212 TCP10Q12799 353 aa23.16■■□□□ 1.3
COL18A1-207ENST00000473212 TBC1D22AQ8WUA7 517 aa23.16■■□□□ 1.3
COL18A1-207ENST00000473212 MYH4Q9Y623 1939 aa23.16■■□□□ 1.3
COL18A1-207ENST00000473212 SEPT2Q15019 361 aa23.16■■□□□ 1.3
COL18A1-207ENST00000473212 SLF2Q8IX21 1173 aa23.16■■□□□ 1.3
COL18A1-207ENST00000473212 KLHL7Q8IXQ5 586 aa23.16■■□□□ 1.3
COL18A1-207ENST00000473212 UBAP1LF5GYI3 381 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 RAD51CO43502 376 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 KCNH2Q12809 1159 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 PABPC4Q13310 644 aaKnown RBP eCLIP23.15■■□□□ 1.32e-8■■■■□ 19.9
COL18A1-207ENST00000473212 ASIC2Q16515 512 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 CDC37Q16543 378 aaPredicted RBP23.15■■□□□ 1.3
COL18A1-207ENST00000473212 CDC42EP5Q6NZY7 148 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 GANQ9H2C0 597 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 SRCAPQ6ZRS2 3230 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 GNA14O95837 355 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 KRT18P05783 430 aaKnown RBP23.15■■□□□ 1.3
COL18A1-207ENST00000473212 EPS15P42566 896 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 GUCY1A3Q02108 690 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 CCDC65Q8IXS2 484 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 KAT2BQ92831 832 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 AIPL1Q9NZN9 384 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 PCDHA1Q9Y5I3 950 aa23.15■■□□□ 1.3
COL18A1-207ENST00000473212 A6NNZ2 444 aa23.14■■□□□ 1.3
COL18A1-207ENST00000473212 RSPH10B2B2RC85 870 aa23.14■■□□□ 1.3
COL18A1-207ENST00000473212 RSPH10BP0C881 870 aa23.14■■□□□ 1.3
COL18A1-207ENST00000473212 HOXD13P35453 343 aa23.14■■□□□ 1.3
COL18A1-207ENST00000473212 TUBB8Q3ZCM7 444 aa23.14■■□□□ 1.3
COL18A1-207ENST00000473212 KDM7AQ6ZMT4 941 aa23.14■■□□□ 1.3
COL18A1-207ENST00000473212 MREGQ8N565 214 aa23.14■■□□□ 1.3
COL18A1-207ENST00000473212 USP38Q8NB14 1042 aa23.14■■□□□ 1.3
COL18A1-207ENST00000473212 AJAP1Q9UKB5 411 aaPredicted RBP23.14■■□□□ 1.3
COL18A1-207ENST00000473212 NR2F2P24468 414 aa23.14■■□□□ 1.29
COL18A1-207ENST00000473212 POLD1P28340 1107 aa23.14■■□□□ 1.29
COL18A1-207ENST00000473212 KCNA1Q09470 495 aa23.14■■□□□ 1.29
COL18A1-207ENST00000473212 SF3B2Q13435 895 aaKnown RBP23.14■■□□□ 1.29
COL18A1-207ENST00000473212 PRR16Q569H4 304 aa23.14■■□□□ 1.29
COL18A1-207ENST00000473212 PLCD3Q8N3E9 789 aa23.14■■□□□ 1.29
COL18A1-207ENST00000473212 ANO3Q9BYT9 981 aa23.14■■□□□ 1.29
COL18A1-207ENST00000473212 SLC12A3P55017 1021 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 MARSP56192 900 aaKnown RBP23.13■■□□□ 1.29
COL18A1-207ENST00000473212 CYP4A11Q02928 519 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 PTK2Q05397 1052 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 HYIQ5T013 277 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 CATSPER3Q86XQ3 398 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 KCNMB3Q9NPA1 279 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 SMCHD1A6NHR9 2005 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 KCNK3O14649 394 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 MYBP10242 640 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 INPP5BP32019 993 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 WHAMMQ8TF30 809 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 TAF4BQ92750 862 aa23.13■■□□□ 1.29
COL18A1-207ENST00000473212 BBOX1O75936 387 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 NR1D1P20393 614 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 LSP1P33241 339 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 TNNC1P63316 161 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 USH1GQ495M9 461 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 GJB7Q6PEY0 223 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 ZNF571Q7Z3V5 609 aaPredicted RBP23.12■■□□□ 1.29
COL18A1-207ENST00000473212 SFR1Q86XK3 245 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 CD302Q8IX05 232 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 CYP2W1Q8TAV3 490 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 NT5C3AQ9H0P0 336 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 DHX36Q9H2U1 1008 aaKnown RBP23.12■■□□□ 1.29
COL18A1-207ENST00000473212 USP21Q9UK80 565 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 MEIS2O14770 477 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 EEF2P13639 858 aaKnown RBP23.12■■□□□ 1.29
COL18A1-207ENST00000473212 GTF2A1P52655 376 aaPredicted RBP23.12■■□□□ 1.29
COL18A1-207ENST00000473212 APOBEC3HQ6NTF7 200 aaKnown RBP23.12■■□□□ 1.29
COL18A1-207ENST00000473212 DPY19L2P1Q6NXN4 242 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 PPP1R18Q6NYC8 613 aa23.12■■□□□ 1.29
COL18A1-207ENST00000473212 IPO4Q8TEX9 1081 aaKnown RBP23.12■■□□□ 1.29
COL18A1-207ENST00000473212 KDM3AQ9Y4C1 1321 aa23.11■■□□□ 1.29
COL18A1-207ENST00000473212 CASP4P49662 377 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms