RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 AP3B2Q13367 1082 aa21.05■□□□□ 0.96
VIM-203ENST00000469543 TPH2Q8IWU9 490 aa21.05■□□□□ 0.96
VIM-203ENST00000469543 SNX12Q9UMY4 172 aa21.05■□□□□ 0.96
VIM-203ENST00000469543 A0A087X0T9 212 aa21.04■□□□□ 0.96
VIM-203ENST00000469543 FAM228BP0C875 321 aa21.04■□□□□ 0.96
VIM-203ENST00000469543 CYP2C19P33261 490 aa21.04■□□□□ 0.96
VIM-203ENST00000469543 ZC2HC1CQ53FD0 456 aaPredicted RBP21.04■□□□□ 0.96
VIM-203ENST00000469543 SYT2Q8N9I0 419 aaPredicted RBP21.04■□□□□ 0.96
VIM-203ENST00000469543 EIF2AK1Q9BQI3 630 aaKnown RBP21.04■□□□□ 0.96
VIM-203ENST00000469543 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.04■□□□□ 0.96
VIM-203ENST00000469543 VPS18Q9P253 973 aa21.04■□□□□ 0.96
VIM-203ENST00000469543 ADAM21Q9UKJ8 722 aa21.04■□□□□ 0.96
VIM-203ENST00000469543 ERLIN1O75477 346 aa21.04■□□□□ 0.96
VIM-203ENST00000469543 AKAP3O75969 853 aa21.04■□□□□ 0.96
VIM-203ENST00000469543 RNASE9P60153 205 aaKnown RBP21.04■□□□□ 0.96
VIM-203ENST00000469543 Q4G0T1 1027 aa21.04■□□□□ 0.96
VIM-203ENST00000469543 DCAF17Q5H9S7 520 aaPredicted RBP21.04■□□□□ 0.96
VIM-203ENST00000469543 HAUS3Q68CZ6 603 aa21.04■□□□□ 0.96
VIM-203ENST00000469543 TRMT1LQ7Z2T5 733 aaKnown RBP21.04■□□□□ 0.96
VIM-203ENST00000469543 RIN2Q8WYP3 895 aaPredicted RBP21.04■□□□□ 0.96
VIM-203ENST00000469543 JRKLQ9Y4A0 524 aa21.04■□□□□ 0.96
VIM-203ENST00000469543 FRMD3A2A2Y4 597 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 LCA5LO95447 670 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 HDLBPQ00341 1268 aaKnown RBP21.03■□□□□ 0.96
VIM-203ENST00000469543 SFMBT2Q5VUG0 894 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 TRIM58Q8NG06 486 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 LRRC1Q9BTT6 524 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 TMEM39BQ9GZU3 492 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 GOLPH3Q9H4A6 298 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 DMGDHQ9UI17 866 aaKnown RBP21.03■□□□□ 0.96
VIM-203ENST00000469543 POTEB2H3BUK9 544 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 STAT2P52630 851 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 CC2D2BQ6DHV5 1058 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 CCDC102AQ96A19 550 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 VEZTQ9HBM0 779 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 WRAP73Q9P2S5 460 aaPredicted RBP21.03■□□□□ 0.96
VIM-203ENST00000469543 ABCB11O95342 1321 aa21.03■□□□□ 0.96
VIM-203ENST00000469543 IGLV3-22A0A075B6J6 115 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 TACC1O75410 805 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 TCERG1LQ5VWI1 586 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 GJB7Q6PEY0 223 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 OSBPL9Q96SU4 736 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 GLT8D2Q9H1C3 349 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 PKD2L1Q9P0L9 805 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 CEP72Q9P209 647 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 GCNT3O95395 438 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 KLRC1P26715 233 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 NMT1P30419 496 aaKnown RBP21.02■□□□□ 0.96
VIM-203ENST00000469543 EPS15P42566 896 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 DGKZQ13574 1117 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 KNOP1Q1ED39 458 aaKnown RBP21.02■□□□□ 0.96
VIM-203ENST00000469543 WDR93Q6P2C0 686 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 HDAC9Q9UKV0 1011 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 FAN1Q9Y2M0 1017 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 PCDHB13Q9Y5F0 798 aa21.02■□□□□ 0.96
VIM-203ENST00000469543 CETN3O15182 167 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 FTCDO95954 541 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 TNNT3P45378 269 aaPredicted RBP21.01■□□□□ 0.95
VIM-203ENST00000469543 COG2Q14746 738 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 SLC9C1Q4G0N8 1177 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 STYK1Q6J9G0 422 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 CEP63Q96MT8 703 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 TLR10Q9BXR5 811 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 ZNF277Q9NRM2 450 aaPredicted RBP21.01■□□□□ 0.95
VIM-203ENST00000469543 AJAP1Q9UKB5 411 aaPredicted RBP21.01■□□□□ 0.95
VIM-203ENST00000469543 SLITRK3O94933 977 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 KLHDC7AQ5VTJ3 777 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 NAP1L4Q99733 375 aaKnown RBP21.01■□□□□ 0.95
VIM-203ENST00000469543 TSGA10Q9BZW7 698 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 ANO9A1A5B4 782 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 DYDC2Q96IM9 177 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 SH2D3AQ9BRG2 576 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 BCS1LQ9Y276 419 aa21.01■□□□□ 0.95
VIM-203ENST00000469543 C10orf71Q711Q0 1435 aa21■□□□□ 0.95
VIM-203ENST00000469543 OTOP1Q7RTM1 612 aa21■□□□□ 0.95
VIM-203ENST00000469543 SPATA4Q8NEY3 305 aa21■□□□□ 0.95
VIM-203ENST00000469543 ERMNQ8TAM6 284 aa21■□□□□ 0.95
VIM-203ENST00000469543 RABGAP1Q9Y3P9 1069 aa21■□□□□ 0.95
VIM-203ENST00000469543 SPDYE2BA6NHP3 402 aa21■□□□□ 0.95
VIM-203ENST00000469543 DDX39AO00148 427 aaKnown RBP21■□□□□ 0.95
VIM-203ENST00000469543 ENTPD3O75355 529 aa21■□□□□ 0.95
VIM-203ENST00000469543 SPDYE6P0CI01 402 aa21■□□□□ 0.95
VIM-203ENST00000469543 PTK2Q05397 1052 aa21■□□□□ 0.95
VIM-203ENST00000469543 RINT1Q6NUQ1 792 aa21■□□□□ 0.95
VIM-203ENST00000469543 MOXD1Q6UVY6 613 aa21■□□□□ 0.95
VIM-203ENST00000469543 MAEAQ7L5Y9 396 aa21■□□□□ 0.95
VIM-203ENST00000469543 ARMCX3Q9UH62 379 aaPredicted RBP21■□□□□ 0.95
VIM-203ENST00000469543 PITPNM2Q9BZ72 1349 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 PALMO75781 387 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 ARP10275 920 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 KLHL30Q0D2K2 578 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 KIAA0753Q2KHM9 967 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 DPY19L2P1Q6NXN4 242 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 FAM20AQ96MK3 541 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 HSD17B14Q9BPX1 270 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 ASTN1O14525 1302 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 SHTN1A0MZ66 631 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 FOSP01100 380 aaPredicted RBP20.99■□□□□ 0.95
VIM-203ENST00000469543 SERPING1P05155 500 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 MMP14P50281 582 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms