RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ATP5OP48047 213 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 NUGGCQ68CJ6 796 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 TMC4Q7Z404 712 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 ELAC2Q9BQ52 826 aaKnown RBP20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 TAF1DQ9H5J8 278 aaPredicted RBP20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 LOC102724428A0A0B4J2F2 783 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 SIK1P57059 783 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 SLITRK6Q9H5Y7 841 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 THRAP3Q9Y2W1 955 aaKnown RBP20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 PCDHB4Q9Y5E5 795 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 LRRN2O75325 713 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 KIF22Q14807 665 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 UBE2TQ9NPD8 197 aaPredicted RBP20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 TEX33O43247 280 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 ASPHQ12797 758 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 GLG1Q92896 1179 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 UBN2Q6ZU65 1347 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 TESPA1A2RU30 521 aaPredicted RBP20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 RFX6Q8HWS3 928 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 AFG3L2Q9Y4W6 797 aa20.5■□□□□ 0.87
CCDC88B-204ENST00000463837 TTC26A0AVF1 554 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 TMEM191BP0C7N4 346 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 EPHA10Q5JZY3 1008 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 MAD1L1Q9Y6D9 718 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 ARAP3Q8WWN8 1544 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 NPHP4O75161 1426 aaPredicted RBP20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 PFDN1O60925 122 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 EPS15L1Q9UBC2 864 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 CDC42BPGQ6DT37 1551 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 CLIC2O15247 247 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 SPARCL1Q14515 664 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 KCNB1Q14721 858 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 FAM196AQ6ZSG2 479 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 RASGRP2Q7LDG7 609 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 SULF1Q8IWU6 871 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 TTLL11Q8NHH1 800 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 HESX1Q9UBX0 185 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 LCMT1Q9UIC8 334 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 PNMA6FA0A0J9YX94 578 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 MXI1P50539 228 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 USPL1Q5W0Q7 1092 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 TTBK2Q6IQ55 1244 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 ZNF577Q9BSK1 485 aa20.49■□□□□ 0.87
CCDC88B-204ENST00000463837 TMEM94Q12767 1356 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 FAM187AA6NFU0 413 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 TTC36A6NLP5 189 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 KRT1P04264 644 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 QTRT2Q9H974 415 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 TRIM49BA6NDI0 452 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 HNRNPDLO14979 420 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 MCF2LO15068 1137 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 VSNL1P62760 191 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 ABCB5Q2M3G0 1257 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 CENPUQ71F23 418 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 PITPNM3Q9BZ71 974 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 TUBE1Q9UJT0 475 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 POLE2P56282 527 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 ZNF772Q68DY9 489 aaPredicted RBP20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 ZNF710Q8N1W2 664 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 ATP6V0A1Q93050 837 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 DCPSQ96C86 337 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.48■□□□□ 0.875e-7■□□□□ 11.2
CCDC88B-204ENST00000463837 CASP1P29466 404 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 YARSP54577 528 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 METTL16Q86W50 562 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 TMEM60Q9H2L4 133 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 KANSL2Q9H9L4 492 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 MLXIPQ9HAP2 919 aa20.48■□□□□ 0.87
CCDC88B-204ENST00000463837 IQANK1A0A1B0GTG1 560 aa20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 PDE1BQ01064 536 aa20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 ATG16L1Q676U5 607 aa20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 NYAP1Q6ZVC0 841 aa20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 ESRRAP11474 423 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 SUDS3Q9H7L9 328 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 RNF17Q9BXT8 1623 aaKnown RBP20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 MORC4Q8TE76 937 aa20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 KRT3P12035 628 aa20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 PARP9Q8IXQ6 854 aa20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 ELOA2Q8IYF1 753 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 LRGUKQ96M69 825 aa20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 ZNF277Q9NRM2 450 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-204ENST00000463837 KIF1CO43896 1103 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 CRKLP46109 303 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 MAGOHP61326 146 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 TRIP13Q15645 432 aaPredicted RBP20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 ZNF449Q6P9G9 518 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 SCYL1Q96KG9 808 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 NACA2Q9H009 215 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 ZBTB1Q9Y2K1 713 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 NRKQ7Z2Y5 1582 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 ZCCHC11Q5TAX3 1644 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 KIF28PB7ZC32 967 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 CA4P22748 312 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 CDC27P30260 824 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 PMS2P54278 862 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 ATP2C1P98194 919 aaPredicted RBP20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 ARHGAP27Q6ZUM4 889 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 HAUS8Q9BT25 410 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 ALAS1P13196 640 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 NFRKBQ6P4R8 1299 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms