RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CEP72Q9P209 647 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 IGF2BP3O00425 579 aaKnown RBP eCLIP12.78□□□□□ -0.36
CPSF3-202ENST00000460593 SLC9A1P19634 815 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 SARNPP82979 210 aaKnown RBP12.78□□□□□ -0.36
CPSF3-202ENST00000460593 ASIC2Q16515 512 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 THEMIS2Q5TEJ8 643 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 OTUD6AQ7L8S5 288 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 PIGBQ92521 554 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 DDX12PQ92771 950 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 EBF2Q9HAK2 575 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 IL17RBQ9NRM6 502 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 SLC12A4Q9UP95 1085 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 DUOX1Q9NRD9 1551 aa12.78□□□□□ -0.36
CPSF3-202ENST00000460593 PAEPP09466 180 aa12.77□□□□□ -0.36
CPSF3-202ENST00000460593 USP11P51784 963 aa12.77□□□□□ -0.36
CPSF3-202ENST00000460593 PLTPP55058 493 aa12.77□□□□□ -0.36
CPSF3-202ENST00000460593 SNX1Q13596 522 aa12.77□□□□□ -0.36
CPSF3-202ENST00000460593 TRIM68Q6AZZ1 485 aa12.77□□□□□ -0.36
CPSF3-202ENST00000460593 GJB7Q6PEY0 223 aa12.77□□□□□ -0.36
CPSF3-202ENST00000460593 SLC17A8Q8NDX2 589 aa12.77□□□□□ -0.36
CPSF3-202ENST00000460593 SLC4A9Q96Q91 983 aa12.77□□□□□ -0.36
CPSF3-202ENST00000460593 SPAG5Q96R06 1193 aa12.77□□□□□ -0.36
CPSF3-202ENST00000460593 DBR1Q9UK59 544 aaKnown RBP12.77□□□□□ -0.36
CPSF3-202ENST00000460593 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.77□□□□□ -0.36
CPSF3-202ENST00000460593 SNX24Q9Y343 169 aa12.77□□□□□ -0.36
CPSF3-202ENST00000460593 RTCBQ9Y3I0 505 aaKnown RBP12.77□□□□□ -0.36
CPSF3-202ENST00000460593 STXBP3O00186 592 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 FGGP02679 453 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 MYL1P05976 194 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 KRT16P08779 473 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 KLRK1P26718 216 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 NAPAP54920 295 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 LLGL1Q15334 1064 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 ECM1Q16610 540 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 TRPM8Q7Z2W7 1104 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 PEX26Q7Z412 305 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 EPS8L3Q8TE67 593 aaKnown RBP12.77□□□□□ -0.37
CPSF3-202ENST00000460593 ATXN2LQ8WWM7 1075 aaKnown RBP12.77□□□□□ -0.37
CPSF3-202ENST00000460593 CALML4Q96GE6 196 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 ZHX3Q9H4I2 956 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 ERVK-5Q9HDB9 667 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 STX8Q9UNK0 236 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 BCORQ6W2J9 1755 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 MYH1P12882 1939 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 CREB1P16220 341 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 ADCY1Q08828 1119 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 CAPRIN2Q6IMN6 1127 aaKnown RBP12.77□□□□□ -0.37
CPSF3-202ENST00000460593 SPDYE1Q8NFV5 336 aaPredicted RBP12.77□□□□□ -0.37
CPSF3-202ENST00000460593 TBCKQ8TEA7 893 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 ATP8B4Q8TF62 1192 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 LARP4BQ92615 738 aaKnown RBP12.77□□□□□ -0.37
CPSF3-202ENST00000460593 RNF25Q96BH1 459 aaPredicted RBP12.77□□□□□ -0.37
CPSF3-202ENST00000460593 HOOK2Q96ED9 719 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 CDK5RAP3Q96JB5 506 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 L3MBTL3Q96JM7 780 aaPredicted RBP12.77□□□□□ -0.37
CPSF3-202ENST00000460593 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.77□□□□□ -0.377e-7■■□□□ 13.4
CPSF3-202ENST00000460593 EPB41L4BQ9H329 900 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 ECT2Q9H8V3 914 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 OSGEPQ9NPF4 335 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 COL4A3BPQ9Y5P4 624 aa12.77□□□□□ -0.37
CPSF3-202ENST00000460593 COL1A1P02452 1464 aaPredicted RBP12.76□□□□□ -0.37
CPSF3-202ENST00000460593 SRRM3A6NNA2 597 aaPredicted RBP12.76□□□□□ -0.37
CPSF3-202ENST00000460593 GHRP10912 638 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 NCALDP61601 193 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 RNASELQ05823 741 aaKnown RBP12.76□□□□□ -0.37
CPSF3-202ENST00000460593 ZKSCAN8Q15776 578 aaPredicted RBP12.76□□□□□ -0.37
CPSF3-202ENST00000460593 ANKS4BQ8N8V4 417 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 ARMC2Q8NEN0 867 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 TLCD1Q96CP7 247 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 FMO2Q99518 471 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 DCP1AQ9NPI6 582 aaPredicted RBP12.76□□□□□ -0.37
CPSF3-202ENST00000460593 INTS9Q9NV88 658 aaKnown RBP12.76□□□□□ -0.37
CPSF3-202ENST00000460593 MAD2L2Q9UI95 211 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 AJAP1Q9UKB5 411 aaPredicted RBP12.76□□□□□ -0.37
CPSF3-202ENST00000460593 SLC37A4O43826 429 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 TDP2O95551 362 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 FGFR4P22455 802 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 AMPD3Q01432 767 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 UNC13DQ70J99 1090 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 MAB21L3Q8N8X9 362 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 LRRC57Q8N9N7 239 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 MCM9Q9NXL9 1143 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 SAMD15Q9P1V8 674 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.76□□□□□ -0.37
CPSF3-202ENST00000460593 MYH4Q9Y623 1939 aa12.76□□□□□ -0.37
CPSF3-202ENST00000460593 MAP3K13O43283 966 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 STARD3NLO95772 234 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 RARAP10276 462 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 NQO1P15559 274 aaKnown RBP12.75□□□□□ -0.37
CPSF3-202ENST00000460593 KIF5BP33176 963 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 ABL2P42684 1182 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 SLC29A2Q14542 456 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 FGFR1OP2Q9NVK5 253 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 SMCO2A6NFE2 343 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 EVI5O60447 810 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 EPS15P42566 896 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 SLC8A3P57103 927 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 ALKBH5Q6P6C2 394 aaKnown RBP12.75□□□□□ -0.37
CPSF3-202ENST00000460593 GUF1Q8N442 669 aaKnown RBP12.75□□□□□ -0.37
CPSF3-202ENST00000460593 C3orf20Q8ND61 904 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms