RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RNF25Q96BH1 459 aaPredicted RBP8.08□□□□□ -1.12
VPS41-208ENST00000448833 ZFP91Q96JP5 570 aaPredicted RBP8.08□□□□□ -1.12
VPS41-208ENST00000448833 DCBLD2Q96PD2 775 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 MXRA8Q9BRK3 442 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 C1QTNF1Q9BXJ1 281 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 FTHL17Q9BXU8 183 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 SUGCTQ9HAC7 445 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 JPH1Q9HDC5 661 aaPredicted RBP8.08□□□□□ -1.12
VPS41-208ENST00000448833 SLC9A2Q9UBY0 812 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 TUBE1Q9UJT0 475 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 V9GY48 417 aaPredicted RBP8.08□□□□□ -1.12
VPS41-208ENST00000448833 EVPLQ92817 2033 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 MUC3AQ02505 3323 aa8.08□□□□□ -1.12
VPS41-208ENST00000448833 WDR81Q562E7 1941 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 SPTBN5Q9NRC6 3674 aaKnown RBP8.07□□□□□ -1.12
VPS41-208ENST00000448833 TTC3P53804 2025 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 GSTTP1A0A1W2PQM5 241 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 LCHNA4D1U4 455 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 MBLAC1A4D2B0 266 aaPredicted RBP8.07□□□□□ -1.12
VPS41-208ENST00000448833 SMCO2A6NFE2 343 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 ATP9AO75110 1047 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 REC8O95072 547 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 RB1P06400 928 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 RXRAP19793 462 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 GNA11P29992 359 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 STAT5BP51692 787 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 AKAP17AQ02040 695 aaKnown RBP8.07□□□□□ -1.12
VPS41-208ENST00000448833 HIC1Q14526 733 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 GRIK4Q16099 956 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 CEP55Q53EZ4 464 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 FAM160B1Q5W0V3 765 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS41-208ENST00000448833 CMTR1Q8N1G2 835 aaKnown RBP8.07□□□□□ -1.12
VPS41-208ENST00000448833 ZNF710Q8N1W2 664 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 BICD2Q8TD16 824 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 WNT8BQ93098 351 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 MRPL38Q96DV4 380 aaKnown RBP8.07□□□□□ -1.12
VPS41-208ENST00000448833 IL17RAQ96F46 866 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 BCAS3Q9H6U6 928 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 C6orf50Q9HD87 102 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 KCNH7Q9NS40 1196 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 BARHL2Q9NY43 387 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 DAXXQ9UER7 740 aaPredicted RBP8.07□□□□□ -1.12
VPS41-208ENST00000448833 TCEAL9Q9UHQ7 104 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 FAM50BQ9Y247 325 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 COL4A4P53420 1690 aaPredicted RBP8.07□□□□□ -1.12
VPS41-208ENST00000448833 COL4A6Q14031 1691 aa8.07□□□□□ -1.12
VPS41-208ENST00000448833 BDP1A6H8Y1 2624 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 TTC28Q96AY4 2481 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 KLF18A0A0U1RQI7 1052 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 GOLGA8AA7E2F4 631 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 GOLGA8BA8MQT2 603 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 H3BNC9 293 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 MEIS1O00470 390 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 RIOK3O14730 519 aaKnown RBP8.06□□□□□ -1.12
VPS41-208ENST00000448833 EPB41L2O43491 1005 aaKnown RBP8.06□□□□□ -1.12
VPS41-208ENST00000448833 LPXNO60711 386 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 UPP2O95045 317 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 CHRNA1P02708 482 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 CTSHP09668 335 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 STAG3L1P0CL83 205 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 PYGBP11216 843 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 PSMA5P28066 241 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 UBE2SQ16763 222 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 EPC2Q52LR7 807 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 TIGD5Q53EQ6 642 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 NAALADL2Q58DX5 795 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 FAM117BQ6P1L5 589 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 TSHZ1Q6ZSZ6 1077 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 TRIM50Q86XT4 487 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 FBXL16Q8N461 479 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 FIBCD1Q8N539 461 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 BBXQ8WY36 941 aaPredicted RBP8.06□□□□□ -1.12
VPS41-208ENST00000448833 C11orf84Q9BUA3 381 aaPredicted RBP8.06□□□□□ -1.12
VPS41-208ENST00000448833 LRRC2Q9BYS8 371 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 LMAN2LQ9H0V9 348 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 TBC1D22BQ9NU19 505 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 MTUS1Q9ULD2 1270 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 NAP1L2Q9ULW6 460 aaPredicted RBP8.06□□□□□ -1.12
VPS41-208ENST00000448833 TRPC6Q9Y210 931 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 PCDHA2Q9Y5H9 948 aa8.06□□□□□ -1.12
VPS41-208ENST00000448833 CNTNAP5Q8WYK1 1306 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.05□□□□□ -1.12
VPS41-208ENST00000448833 hCG_1642624A0A1W2PR95 340 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 ESYT2A0FGR8 921 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 POTEB3A0JP26 581 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 EPOPA6NHQ4 379 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 STXBP3O00186 592 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 ENPP3O14638 875 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 HBP1O60381 514 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 ATG7O95352 703 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 CYP3A4P08684 503 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 SCG2P13521 617 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 INSRRP14616 1297 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 MARK3P27448 753 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 SREBF1P36956 1147 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 METAP2P50579 478 aaKnown RBP eCLIP8.05□□□□□ -1.12
VPS41-208ENST00000448833 ACTR2P61160 394 aa8.05□□□□□ -1.12
VPS41-208ENST00000448833 MRPS6P82932 125 aaKnown RBP8.05□□□□□ -1.12
VPS41-208ENST00000448833 SETQ01105 290 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms