RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 FAN1Q9Y2M0 1017 aa17.63■□□□□ 0.41
SHQ1-202ENST00000444040 ZC3H4Q9UPT8 1303 aaKnown RBP17.63■□□□□ 0.41
SHQ1-202ENST00000444040 CYP3A4P08684 503 aa17.63■□□□□ 0.41
SHQ1-202ENST00000444040 HOXA13P31271 388 aaPredicted RBP17.63■□□□□ 0.41
SHQ1-202ENST00000444040 AARSP49588 968 aaKnown RBP eCLIP17.63■□□□□ 0.41
SHQ1-202ENST00000444040 RBM26Q5T8P6 1007 aaKnown RBP17.63■□□□□ 0.41
SHQ1-202ENST00000444040 TAF3Q5VWG9 929 aa17.63■□□□□ 0.41
SHQ1-202ENST00000444040 FAM71BQ8TC56 605 aa17.63■□□□□ 0.41
SHQ1-202ENST00000444040 NOX5Q96PH1 765 aa17.63■□□□□ 0.41
SHQ1-202ENST00000444040 STK24Q9Y6E0 443 aa17.63■□□□□ 0.41
SHQ1-202ENST00000444040 PRMT6Q96LA8 375 aaPredicted RBP17.62■□□□□ 0.41
SHQ1-202ENST00000444040 MED4Q9NPJ6 270 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 ATAD5Q96QE3 1844 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 PIK3CDO00329 1044 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 NCK2O43639 380 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 BUB1O43683 1085 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 SLC18A3Q16572 532 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 FRMD5Q7Z6J6 570 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 CCDC102AQ96A19 550 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 POLR3CQ9BUI4 534 aaPredicted RBP17.62■□□□□ 0.41
SHQ1-202ENST00000444040 ACBD3Q9H3P7 528 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 ZNF219Q9P2Y4 722 aaPredicted RBP17.62■□□□□ 0.41
SHQ1-202ENST00000444040 PRR12Q9ULL5 1215 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 HPCAL4Q9UM19 191 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 CXCR5P32302 372 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 AOC3Q16853 763 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 BMT2Q1RMZ1 405 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 TBC1D5Q92609 795 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 HDAC9Q9UKV0 1011 aa17.62■□□□□ 0.41
SHQ1-202ENST00000444040 SLX4Q8IY92 1834 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 IGLV3-22A0A075B6J6 115 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 H0YIN7 160 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 PDXKO00764 312 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 MYBP10242 640 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 CYP4A11Q02928 519 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 RAPGEF1Q13905 1077 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 EZH2Q15910 746 aaKnown RBP17.61■□□□□ 0.41
SHQ1-202ENST00000444040 PSMB7Q99436 277 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 LRRC1Q9BTT6 524 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 SYNPO2Q9UMS6 1093 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 COL2A1P02458 1487 aaPredicted RBP17.61■□□□□ 0.41
SHQ1-202ENST00000444040 A0A087X0T9 212 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 RSPH10B2B2RC85 870 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 EML1O00423 815 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 PRPF6O94906 941 aaKnown RBP17.61■□□□□ 0.41
SHQ1-202ENST00000444040 SYF2O95926 243 aaKnown RBP17.61■□□□□ 0.41
SHQ1-202ENST00000444040 FAM228BP0C875 321 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 RSPH10BP0C881 870 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 HNRNPH2P55795 449 aaKnown RBP17.61■□□□□ 0.41
SHQ1-202ENST00000444040 NAB2Q15742 525 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 HSP90B2PQ58FF3 399 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 GSPT2Q8IYD1 628 aaKnown RBP17.61■□□□□ 0.41
SHQ1-202ENST00000444040 FAM133AQ8N9E0 248 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 HDAC7Q8WUI4 952 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 C7orf43Q8WVR3 580 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 EIF2AK1Q9BQI3 630 aaKnown RBP17.61■□□□□ 0.41
SHQ1-202ENST00000444040 RUSC1Q9BVN2 902 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 BHMT2Q9H2M3 363 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 BCAS3Q9H6U6 928 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 SMARCAL1Q9NZC9 954 aa17.61■□□□□ 0.41
SHQ1-202ENST00000444040 DMGDHQ9UI17 866 aaKnown RBP17.61■□□□□ 0.41
SHQ1-202ENST00000444040 SPICE1Q8N0Z3 855 aa17.6■□□□□ 0.41
SHQ1-202ENST00000444040 CSRNP1Q96S65 589 aa17.6■□□□□ 0.41
SHQ1-202ENST00000444040 PLCB1Q9NQ66 1216 aa17.6■□□□□ 0.41
SHQ1-202ENST00000444040 EHD2Q9NZN4 543 aa17.6■□□□□ 0.41
SHQ1-202ENST00000444040 ARMCX3Q9UH62 379 aaPredicted RBP17.6■□□□□ 0.41
SHQ1-202ENST00000444040 EYA4O95677 639 aa17.6■□□□□ 0.41
SHQ1-202ENST00000444040 APBA3O96018 575 aa17.6■□□□□ 0.41
SHQ1-202ENST00000444040 KLRC1P26715 233 aa17.6■□□□□ 0.41
SHQ1-202ENST00000444040 TNNT3P45378 269 aaPredicted RBP17.6■□□□□ 0.41
SHQ1-202ENST00000444040 KLHL30Q0D2K2 578 aa17.6■□□□□ 0.41
SHQ1-202ENST00000444040 AENQ8WTP8 325 aaKnown RBP17.6■□□□□ 0.41
SHQ1-202ENST00000444040 RUBCNQ92622 972 aa17.6■□□□□ 0.41
SHQ1-202ENST00000444040 SELENOOQ9BVL4 669 aa17.6■□□□□ 0.41
SHQ1-202ENST00000444040 RGL1Q9NZL6 768 aa17.6■□□□□ 0.41
SHQ1-202ENST00000444040 ASTN1O14525 1302 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 AKAP3O75969 853 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 ACTN1P12814 892 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 SLC9A1P19634 815 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 EPS15P42566 896 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 ECE1P42892 770 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 KIAA1755Q5JYT7 1200 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 CC2D2BQ6DHV5 1058 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 CALCOCO1Q9P1Z2 691 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 ADAMTS1Q9UHI8 967 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 MYH10P35580 1976 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 CALUO43852 315 aaPredicted RBP17.59■□□□□ 0.41
SHQ1-202ENST00000444040 CHRNA5P30532 468 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 LMAN1P49257 510 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 ARID5AQ03989 594 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 CCDC70Q6NSX1 233 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 IRF2BP2Q7Z5L9 587 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 KCTD17Q8N5Z5 321 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 GDAP1L1Q96MZ0 367 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 HSD17B14Q9BPX1 270 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 LUC7LQ9NQ29 371 aaKnown RBP17.59■□□□□ 0.41
SHQ1-202ENST00000444040 TYW1Q9NV66 732 aaKnown RBP17.59■□□□□ 0.41
SHQ1-202ENST00000444040 TSKSQ9UJT2 592 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 RABGAP1Q9Y3P9 1069 aa17.59■□□□□ 0.41
SHQ1-202ENST00000444040 YDJCA8MPS7 323 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms