RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 STAT6P42226 847 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 SEC24CP53992 1094 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 PMS2P54278 862 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 GUCY1A3Q02108 690 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 PTPN12Q05209 780 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 MAP3K12Q12852 859 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 CUL4AQ13619 759 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 SEPT2Q15019 361 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 Q3C1V9 767 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 TTC22Q5TAA0 569 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 NEK10Q6ZWH5 1172 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 TTC6Q86TZ1 520 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 ZNF594Q96JF6 807 aaPredicted RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 PHACTR3Q96KR7 559 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 CAPZA3Q96KX2 299 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 IFT74Q96LB3 600 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 NAPGQ99747 312 aaPredicted RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 LRRC27Q9C0I9 530 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 OSBPL5Q9H0X9 879 aaPredicted RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 EPN3Q9H201 632 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 NRDE2Q9H7Z3 1164 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 PIDD1Q9HB75 910 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 PCDH18Q9HCL0 1135 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 DMAP1Q9NPF5 467 aaPredicted RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 ADARB2Q9NS39 739 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 WDR35Q9P2L0 1181 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 GGA1Q9UJY5 639 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 HPCAL4Q9UM19 191 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 ZNF148Q9UQR1 794 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 DIS3Q9Y2L1 958 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 ATXN2Q99700 1313 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 A0A1W2PP64 1363 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 NSD3Q9BZ95 1437 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 COL5A2P05997 1499 aaPredicted RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 NRXN3Q9Y4C0 1643 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 MYO5BQ9ULV0 1848 aa3.03□□□□□ -1.93
LIG4-203ENST00000442234 IFT172Q9UG01 1749 aa3.03□□□□□ -1.93
LIG4-203ENST00000442234 TMEM131LA2VDJ0 1609 aa3.03□□□□□ -1.93
LIG4-203ENST00000442234 TTC21AQ8NDW8 1320 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 RCCD1A6NED2 376 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 GPR25O00155 361 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 TNPO2O14787 897 aaKnown RBP3.02□□□□□ -1.93
LIG4-203ENST00000442234 TACC1O75410 805 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 NR1I2O75469 434 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 SNRPA1P09661 255 aaKnown RBP3.02□□□□□ -1.93
LIG4-203ENST00000442234 USP17L8P0C7I0 530 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 CCDC166P0CW27 439 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 VDRP11473 427 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 SDSP20132 328 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 HOXD12P35452 270 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 IGHMBP2P38935 993 aaKnown RBP3.02□□□□□ -1.93
LIG4-203ENST00000442234 RFC5P40937 340 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 SCTRP47872 440 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 KCNJ6P48051 423 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 VPS41P49754 854 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 COG7P83436 770 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 PABPC4Q13310 644 aaKnown RBP eCLIP3.02□□□□□ -1.93
LIG4-203ENST00000442234 ALDH1L2Q3SY69 923 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.02□□□□□ -1.93
LIG4-203ENST00000442234 FAM47CQ5HY64 1035 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 ANKRD20A2Q5SQ80 823 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 C6orf183Q5T699 404 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 ANKRD20A1Q5TYW2 823 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 ANKRD20A3Q5VUR7 823 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 CST9Q5W186 159 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 ARMCX5Q6P1M9 558 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 ZBTB33Q86T24 672 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 ZNF554Q86TJ5 538 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 PPFIBP1Q86W92 1011 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 FAM133AQ8N9E0 248 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 CEP70Q8NHQ1 597 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 NLRP7Q8WX94 980 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.02□□□□□ -1.93
LIG4-203ENST00000442234 RSPH1Q8WYR4 309 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 KIFAP3Q92845 792 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 SELENOOQ9BVL4 669 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.02□□□□□ -1.93
LIG4-203ENST00000442234 MOV10L1Q9BXT6 1211 aaKnown RBP3.02□□□□□ -1.93
LIG4-203ENST00000442234 ANKZF1Q9H8Y5 726 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 SLC52A2Q9HAB3 445 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 SENP2Q9HC62 589 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 MKS1Q9NXB0 559 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.02□□□□□ -1.93
LIG4-203ENST00000442234 ZNRF3Q9ULT6 936 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 FAF1Q9UNN5 650 aaPredicted RBP3.02□□□□□ -1.93
LIG4-203ENST00000442234 PHF24Q9UPV7 400 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 ZNF510Q9Y2H8 683 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 IKBKGQ9Y6K9 419 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 MYOM1P52179 1685 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 COL15A1P39059 1388 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 MAP3K5Q99683 1374 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 GOLGA4Q13439 2230 aaKnown RBP3.02□□□□□ -1.93
LIG4-203ENST00000442234 ZNF521Q96K83 1311 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 A0A087WWV3 80 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 PALM3A6NDB9 673 aaPredicted RBP3.02□□□□□ -1.93
LIG4-203ENST00000442234 SPDYE5A6NIY4 337 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 UNCXA6NJT0 531 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 F6X3S4 739 aa3.02□□□□□ -1.93
LIG4-203ENST00000442234 SHOX2O60902 331 aaPredicted RBP3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms