RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ARIH2O95376 493 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 HOXD11P31277 338 aaPredicted RBP11.3□□□□□ -0.6
CD44-207ENST00000425428 STAT5BP51692 787 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 FAM160A1Q05DH4 1040 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 GNASQ5JWF2 1037 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 SPECC1Q5M775 1068 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 SWSAP1Q6NVH7 229 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 EXOC8Q8IYI6 725 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 PDILTQ8N807 584 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 SH3TC2Q8TF17 1288 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 AFG1LQ8WV93 481 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 CCDC47Q96A33 483 aaKnown RBP11.3□□□□□ -0.6
CD44-207ENST00000425428 TMEM106CQ9BVX2 250 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 RNF208Q9H0X6 261 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 MAGEF1Q9HAY2 307 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 ERAP1Q9NZ08 941 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 GABBR1Q9UBS5 961 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 STK17AQ9UEE5 414 aa11.3□□□□□ -0.6
CD44-207ENST00000425428 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.29□□□□□ -0.6
CD44-207ENST00000425428 KBTBD13C9JR72 458 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 POLR2DO15514 142 aaKnown RBP11.29□□□□□ -0.6
CD44-207ENST00000425428 PFKFB1P16118 471 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 CCND3P30281 292 aaPredicted RBP11.29□□□□□ -0.6
CD44-207ENST00000425428 CYP4A11Q02928 519 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 ARHGAP1Q07960 439 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 FSCN1Q16658 493 aaKnown RBP11.29□□□□□ -0.6
CD44-207ENST00000425428 AXDND1Q5T1B0 1012 aaPredicted RBP11.29□□□□□ -0.6
CD44-207ENST00000425428 MAP3K21Q5TCX8 1036 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 SHC4Q6S5L8 630 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 PLPPR4Q7Z2D5 763 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 CNNM3Q8NE01 707 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 COPS5Q92905 334 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 VTI1AQ96AJ9 217 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 DYDC2Q96IM9 177 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 EPSTI1Q96J88 318 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 GPR20Q99678 358 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 LXNQ9BS40 222 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.29□□□□□ -0.6
CD44-207ENST00000425428 LMBRD1Q9NUN5 540 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 DDX19AQ9NUU7 478 aaKnown RBP11.29□□□□□ -0.6
CD44-207ENST00000425428 KIAA1024Q9UPX6 916 aa11.29□□□□□ -0.6
CD44-207ENST00000425428 PCNTO95613 3336 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 SSBP05455 408 aaKnown RBP eCLIP11.28□□□□□ -0.6
CD44-207ENST00000425428 KRT18P05783 430 aaKnown RBP11.28□□□□□ -0.6
CD44-207ENST00000425428 MYL3P08590 195 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 XRCC6P12956 609 aaKnown RBP eCLIP11.28□□□□□ -0.6
CD44-207ENST00000425428 GJA9P57773 515 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 SPIRE1Q08AE8 756 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 CTTNQ14247 550 aaKnown RBP11.28□□□□□ -0.6
CD44-207ENST00000425428 NFKBIBQ15653 356 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 IL17AQ16552 155 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 HSDL1Q3SXM5 330 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 ABHD15Q6UXT9 468 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 SV2BQ7L1I2 683 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 BANK1Q8NDB2 785 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 DHX58Q96C10 678 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 ANP32EQ9BTT0 268 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 GNEQ9Y223 722 aaKnown RBP11.28□□□□□ -0.6
CD44-207ENST00000425428 ARHGEF35A5YM69 484 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 A6NJR5 290 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 EML1O00423 815 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 CABYRO75952 493 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 ZNF202O95125 648 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 ATG7O95352 703 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 IGHA2P01877 340 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 MMP3P08254 477 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 CDC25AP30304 524 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 CHMP4BP1P59074 171 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 CAP1Q01518 475 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 GRIN1Q05586 938 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 TRIM32Q13049 653 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 KARSQ15046 597 aaKnown RBP11.28□□□□□ -0.6
CD44-207ENST00000425428 XKR3Q5GH77 459 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 CATSPER3Q86XQ3 398 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 C4orf19Q8IY42 314 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 TRPV1Q8NER1 839 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 JPH2Q9BR39 696 aaPredicted RBP11.28□□□□□ -0.6
CD44-207ENST00000425428 PANK2Q9BZ23 570 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 SEPT9Q9UHD8 586 aaPredicted RBP11.28□□□□□ -0.6
CD44-207ENST00000425428 TRPC6Q9Y210 931 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 PPME1Q9Y570 386 aa11.28□□□□□ -0.6
CD44-207ENST00000425428 EMSYQ7Z589 1322 aa11.27□□□□□ -0.6
CD44-207ENST00000425428 POTEB3A0JP26 581 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 PP2D1A8MPX8 630 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 CTAGE5O15320 804 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 GADD45BO75293 160 aaPredicted RBP11.27□□□□□ -0.61
CD44-207ENST00000425428 SLITRK3O94933 977 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 CCNE2O96020 404 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 LGALS2P05162 132 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 GNAT1P11488 350 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 CCL5P13501 91 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 PLCG1P19174 1290 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 YWHABP31946 246 aaKnown RBP11.27□□□□□ -0.61
CD44-207ENST00000425428 NDUFA8P51970 172 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 GJC2Q5T442 439 aaPredicted RBP11.27□□□□□ -0.61
CD44-207ENST00000425428 POTEBQ6S5H4 581 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 TRMT1LQ7Z2T5 733 aaKnown RBP11.27□□□□□ -0.61
CD44-207ENST00000425428 AFAP1L1Q8TED9 768 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 BBXQ8WY36 941 aaPredicted RBP11.27□□□□□ -0.61
CD44-207ENST00000425428 LARP4BQ92615 738 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms