RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 BECN1Q14457 450 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 TTC38Q5R3I4 469 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 TAF2Q6P1X5 1199 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 MIER3Q7Z3K6 550 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 POTEDQ86YR6 584 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 RETREG2Q8NC44 543 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 TRPV6Q9H1D0 765 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 TRMT13Q9NUP7 481 aaKnown RBP16.5■□□□□ 0.23
LIMS1-206ENST00000414829 CEP131Q9UPN4 1083 aa16.5■□□□□ 0.23
LIMS1-206ENST00000414829 IGSF9BQ9UPX0 1349 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 A0A1W2PPC1 479 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 FAM205CA6NFA0 338 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 CHMP2AO43633 222 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 HBP1O60381 514 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 BMP15O95972 392 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 MARK3P27448 753 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 MCM7P33993 719 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 RBL2Q08999 1139 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 GDF6Q6KF10 455 aaPredicted RBP16.49■□□□□ 0.23
LIMS1-206ENST00000414829 CKAP2LQ8IYA6 745 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 NEK9Q8TD19 979 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 ATP8B4Q8TF62 1192 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 RAB34Q9BZG1 259 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 UNC45AQ9H3U1 944 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 PCDHA12Q9UN75 941 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 COL1A2P08123 1366 aa16.49■□□□□ 0.23
LIMS1-206ENST00000414829 POTEB3A0JP26 581 aa16.48■□□□□ 0.23
LIMS1-206ENST00000414829 VPS37CA5D8V6 355 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-206ENST00000414829 TRIM43BA6NCK2 446 aa16.48■□□□□ 0.23
LIMS1-206ENST00000414829 PFKMP08237 780 aa16.48■□□□□ 0.23
LIMS1-206ENST00000414829 OR52Z1P0C646 297 aa16.48■□□□□ 0.23
LIMS1-206ENST00000414829 RFC2P35250 354 aa16.48■□□□□ 0.23
LIMS1-206ENST00000414829 FPGSQ05932 587 aa16.48■□□□□ 0.23
LIMS1-206ENST00000414829 PPIGQ13427 754 aaKnown RBP eCLIP16.48■□□□□ 0.23
LIMS1-206ENST00000414829 TMEM266Q2M3C6 531 aa16.48■□□□□ 0.23
LIMS1-206ENST00000414829 SWSAP1Q6NVH7 229 aa16.48■□□□□ 0.23
LIMS1-206ENST00000414829 POTEBQ6S5H4 581 aa16.48■□□□□ 0.23
LIMS1-206ENST00000414829 RSPH3Q86UC2 560 aa16.48■□□□□ 0.23
LIMS1-206ENST00000414829 CCDC60Q8IWA6 550 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-206ENST00000414829 BBXQ8WY36 941 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-206ENST00000414829 TRIM43Q96BQ3 446 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-206ENST00000414829 NOC4LQ9BVI4 516 aaKnown RBP16.48■□□□□ 0.23
LIMS1-206ENST00000414829 MAFBQ9Y5Q3 323 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-206ENST00000414829 STK24Q9Y6E0 443 aa16.48■□□□□ 0.23
LIMS1-206ENST00000414829 MYH7BA7E2Y1 1941 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 KIF28PB7ZC32 967 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 ATP2B1P20020 1258 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 BMP8BP34820 402 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 MAGEA10P43363 369 aaPredicted RBP16.47■□□□□ 0.23
LIMS1-206ENST00000414829 GRIK4Q16099 956 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 MFSD5Q6N075 450 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 B3GNT9Q6UX72 402 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 SERINC5Q86VE9 423 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 LMBR1Q8WVP7 490 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 HAS1Q92839 578 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 PCYT2Q99447 389 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 GDF15Q99988 308 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 GABBR1Q9UBS5 961 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 TUBE1Q9UJT0 475 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 VAV3Q9UKW4 847 aa16.47■□□□□ 0.23
LIMS1-206ENST00000414829 CYP2C9P11712 490 aa16.46■□□□□ 0.23
LIMS1-206ENST00000414829 PSMC5P62195 406 aa16.46■□□□□ 0.23
LIMS1-206ENST00000414829 PLCB4Q15147 1175 aa16.46■□□□□ 0.23
LIMS1-206ENST00000414829 ZNF484Q5JVG2 852 aa16.46■□□□□ 0.23
LIMS1-206ENST00000414829 SH3RF1Q7Z6J0 888 aa16.46■□□□□ 0.23
LIMS1-206ENST00000414829 MTMR9Q96QG7 549 aa16.46■□□□□ 0.23
LIMS1-206ENST00000414829 PPP1R12CQ9BZL4 782 aa16.46■□□□□ 0.23
LIMS1-206ENST00000414829 UBE2OQ9C0C9 1292 aaKnown RBP16.46■□□□□ 0.23
LIMS1-206ENST00000414829 MTIF3Q9H2K0 278 aaKnown RBP16.46■□□□□ 0.23
LIMS1-206ENST00000414829 RNPEPQ9H4A4 650 aa16.46■□□□□ 0.23
LIMS1-206ENST00000414829 TTC12Q9H892 705 aaPredicted RBP16.46■□□□□ 0.23
LIMS1-206ENST00000414829 NRBP2Q9NSY0 501 aa16.46■□□□□ 0.23
LIMS1-206ENST00000414829 TELO2Q9Y4R8 837 aa16.46■□□□□ 0.23
LIMS1-206ENST00000414829 PPME1Q9Y570 386 aa16.46■□□□□ 0.23
LIMS1-206ENST00000414829 MBLAC1A4D2B0 266 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-206ENST00000414829 OATP04181 439 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 P4HBP07237 508 aaKnown RBP16.45■□□□□ 0.22
LIMS1-206ENST00000414829 SELPP16109 830 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 SYT1P21579 422 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 QARSP47897 775 aaKnown RBP16.45■□□□□ 0.22
LIMS1-206ENST00000414829 MDM2Q00987 491 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-206ENST00000414829 PRKCEQ02156 737 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 EPHA7Q15375 998 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 XKR3Q5GH77 459 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 HAUS3Q68CZ6 603 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 NCAPH2Q6IBW4 605 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 PSRC1Q6PGN9 363 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-206ENST00000414829 CHRDL2Q6WN34 429 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 RPAINQ86UA6 219 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 EXOC8Q8IYI6 725 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 RPUSD2Q8IZ73 545 aaKnown RBP16.45■□□□□ 0.22
LIMS1-206ENST00000414829 ZNF710Q8N1W2 664 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 ERMNQ8TAM6 284 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 BADQ92934 168 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 UIMC1Q96RL1 719 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 ZSCAN16Q9H4T2 348 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-206ENST00000414829 SETD4Q9NVD3 440 aa16.45■□□□□ 0.22
LIMS1-206ENST00000414829 MAGEB2O15479 319 aa16.44■□□□□ 0.22
LIMS1-206ENST00000414829 STX6O43752 255 aa16.44■□□□□ 0.22
LIMS1-206ENST00000414829 INSRRP14616 1297 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms