RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 ZBTB8OSQ8IWT0 167 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 UHMK1Q8TAS1 419 aaKnown RBP12.2□□□□□ -0.46
PTPRF-204ENST00000412568 CCSER1Q9C0I3 900 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 RASAL2Q9UJF2 1139 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 ENTPD3O75355 529 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 IL1R1P14778 569 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 GCLMP48507 274 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 PRELPP51888 382 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 BRDTQ58F21 947 aaPredicted RBP12.2□□□□□ -0.46
PTPRF-204ENST00000412568 CERS5Q8N5B7 392 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 FAM76AQ8TAV0 307 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 FAM20AQ96MK3 541 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 CHP1Q99653 195 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 DNAI2Q9GZS0 605 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 AGTPBP1Q9UPW5 1226 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 AKT3Q9Y243 479 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 CYTH3O43739 400 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 KIF11P52732 1056 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 LRRC63Q05C16 580 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 KCNH2Q12809 1159 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 CALCOCO2Q13137 446 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 AMIGO3Q86WK7 504 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 OTUD6BQ8N6M0 293 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 ABHD10Q9NUJ1 306 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 GABBR1Q9UBS5 961 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 GAP43P17677 238 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 NT5C2P49902 561 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 TFAMQ00059 246 aaKnown RBP12.19□□□□□ -0.46
PTPRF-204ENST00000412568 CCDC105Q8IYK2 499 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 GOLGA5Q8TBA6 731 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 AKT1S1Q96B36 256 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 SELENOSQ9BQE4 189 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 DPH5Q9H2P9 285 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 VCPKMTQ9H867 229 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 LRRC53A6NM62 1247 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 TMEM191BP0C7N4 346 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 TMOD1P28289 359 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 FXR1P51114 621 aaKnown RBP eCLIP12.19□□□□□ -0.46
PTPRF-204ENST00000412568 LONRF2Q1L5Z9 754 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-204ENST00000412568 ZDHHC15Q96MV8 337 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 ACCSQ96QU6 501 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 ELP3Q9H9T3 547 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 NXF1Q9UBU9 619 aaKnown RBP12.19□□□□□ -0.46
PTPRF-204ENST00000412568 ADD3Q9UEY8 706 aaKnown RBP12.19□□□□□ -0.46
PTPRF-204ENST00000412568 ASIC3Q9UHC3 531 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 AMFRQ9UKV5 643 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 GOLGA6BA6NDN3 693 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 NR3C1P04150 777 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 MYZAPP0CAP1 466 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 INPP5BP32019 993 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 PSMD2Q13200 908 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 ZNF394Q53GI3 561 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 IQCDQ96DY2 449 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 WDR24Q96S15 920 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 ADGRG1Q9Y653 693 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 CD44P16070 742 aaKnown RBP12.19□□□□□ -0.46
PTPRF-204ENST00000412568 CD58P19256 250 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 MXI1P50539 228 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 USP11P51784 963 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 APOBEC3HQ6NTF7 200 aaKnown RBP12.19□□□□□ -0.46
PTPRF-204ENST00000412568 THNSL1Q8IYQ7 743 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 CCDC155Q8N6L0 562 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 RETREG2Q8NC44 543 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 CCDC26Q8TAB7 109 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 SAAL1Q96ER3 474 aa12.19□□□□□ -0.46
PTPRF-204ENST00000412568 K7ERI5 159 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 IFNB1P01574 187 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 CDAN1Q8IWY9 1227 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 UBL4BQ8N7F7 174 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 PROCA1Q8NCQ7 364 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-204ENST00000412568 PDE11AQ9HCR9 933 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 HYOU1Q9Y4L1 999 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 MED1Q15648 1581 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-204ENST00000412568 PVALEFA0A1B0GWK0 134 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 KRIT1O00522 736 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 SHMT1P34896 483 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 IRX5P78411 483 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-204ENST00000412568 LIN9Q5TKA1 542 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 IFT20Q8IY31 132 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 AFAP1L1Q8TED9 768 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 ATG4CQ96DT6 458 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 FAM49AQ9H0Q0 323 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-204ENST00000412568 AGPAT5Q9NUQ2 364 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 A0A1W2PRG0 241 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 PIK3CAP42336 1068 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 MIS18BP1Q6P0N0 1132 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 ARMC9Q7Z3E5 817 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 ADSSL1Q8N142 457 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 NKX2-3Q8TAU0 364 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 CYP2W1Q8TAV3 490 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 NSUN6Q8TEA1 469 aaKnown RBP12.18□□□□□ -0.46
PTPRF-204ENST00000412568 HOXC10Q9NYD6 342 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 HACL1Q9UJ83 578 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 TFR2Q9UP52 801 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 HPSEQ9Y251 543 aa12.18□□□□□ -0.46
PTPRF-204ENST00000412568 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.18□□□□□ -0.46
PTPRF-204ENST00000412568 FOXP2O15409 715 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 KLK7P49862 253 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 GFPT1Q06210 699 aaPredicted RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms