RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ABHD15Q6UXT9 468 aa21.68■■□□□ 1.06
SF3A1-202ENST00000411423 BICD2Q8TD16 824 aa21.68■■□□□ 1.06
SF3A1-202ENST00000411423 NRCAMQ92823 1304 aa21.68■■□□□ 1.06
SF3A1-202ENST00000411423 SIP14410 1827 aa21.68■■□□□ 1.06
SF3A1-202ENST00000411423 RSPH10B2B2RC85 870 aa21.67■■□□□ 1.06
SF3A1-202ENST00000411423 IPO5O00410 1097 aaKnown RBP21.67■■□□□ 1.06
SF3A1-202ENST00000411423 RSPH10BP0C881 870 aa21.67■■□□□ 1.06
SF3A1-202ENST00000411423 WDR5P61964 334 aaKnown RBP21.67■■□□□ 1.06
SF3A1-202ENST00000411423 MKRN4PQ13434 485 aaPredicted RBP21.67■■□□□ 1.06
SF3A1-202ENST00000411423 PLCB4Q15147 1175 aa21.67■■□□□ 1.06
SF3A1-202ENST00000411423 PRR16Q569H4 304 aa21.67■■□□□ 1.06
SF3A1-202ENST00000411423 MCTP2Q6DN12 878 aa21.67■■□□□ 1.06
SF3A1-202ENST00000411423 CNKSR3Q6P9H4 555 aa21.67■■□□□ 1.06
SF3A1-202ENST00000411423 BLIDQ8IZY5 108 aa21.67■■□□□ 1.06
SF3A1-202ENST00000411423 TRAPPC12Q8WVT3 735 aa21.67■■□□□ 1.06
SF3A1-202ENST00000411423 MBLAC1A4D2B0 266 aaPredicted RBP21.66■■□□□ 1.06
SF3A1-202ENST00000411423 FDPSP14324 419 aaKnown RBP21.66■■□□□ 1.06
SF3A1-202ENST00000411423 INSRRP14616 1297 aa21.66■■□□□ 1.06
SF3A1-202ENST00000411423 ATP4AP20648 1035 aa21.66■■□□□ 1.06
SF3A1-202ENST00000411423 IGBP1P78318 339 aa21.66■■□□□ 1.06
SF3A1-202ENST00000411423 RAB30Q15771 203 aa21.66■■□□□ 1.06
SF3A1-202ENST00000411423 CCDC60Q8IWA6 550 aaPredicted RBP21.66■■□□□ 1.06
SF3A1-202ENST00000411423 DAGLBQ8NCG7 672 aa21.66■■□□□ 1.06
SF3A1-202ENST00000411423 TBCKQ8TEA7 893 aa21.66■■□□□ 1.06
SF3A1-202ENST00000411423 GJA10Q969M2 543 aa21.66■■□□□ 1.06
SF3A1-202ENST00000411423 ZNF577Q9BSK1 485 aa21.66■■□□□ 1.06
SF3A1-202ENST00000411423 PHF20Q9BVI0 1012 aa21.66■■□□□ 1.06
SF3A1-202ENST00000411423 MSRAQ9UJ68 235 aa21.66■■□□□ 1.06
SF3A1-202ENST00000411423 PRUNE2Q8WUY3 3088 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 STK36Q9NRP7 1315 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 BAIAP3O94812 1187 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 PARNO95453 639 aaKnown RBP21.65■■□□□ 1.06
SF3A1-202ENST00000411423 GNAT1P11488 350 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 STAT5BP51692 787 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 NEK4P51957 841 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 MGAT3Q09327 533 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 FAM26DQ5JW98 314 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 CPLX2Q6PUV4 134 aaKnown RBP21.65■■□□□ 1.06
SF3A1-202ENST00000411423 PLPPR4Q7Z2D5 763 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 DBF4BQ8NFT6 615 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 SLC9A7Q96T83 725 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 KIF2CQ99661 725 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 PCDHA11Q9Y5I1 949 aa21.65■■□□□ 1.06
SF3A1-202ENST00000411423 MSH4O15457 936 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 TDP2O95551 362 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 CHRNA1P02708 482 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 SETQ01105 290 aaPredicted RBP21.64■■□□□ 1.05
SF3A1-202ENST00000411423 ANKRD1Q15327 319 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 PLEKHG4Q58EX7 1191 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.64■■□□□ 1.052e-7■■■■■ 34.3
SF3A1-202ENST00000411423 SPRED2Q7Z698 418 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 HERC6Q8IVU3 1022 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 OXER1Q8TDS5 423 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 GTF3C6Q969F1 213 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 PRDM12Q9H4Q4 367 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 AZI2Q9H6S1 392 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 TUBE1Q9UJT0 475 aa21.64■■□□□ 1.05
SF3A1-202ENST00000411423 CAND2O75155 1236 aa21.63■■□□□ 1.05
SF3A1-202ENST00000411423 PHOSPHO2Q8TCD6 241 aa21.63■■□□□ 1.05
SF3A1-202ENST00000411423 DNAJB3Q8WWF6 145 aa21.63■■□□□ 1.05
SF3A1-202ENST00000411423 UNC80Q8N2C7 3258 aa21.62■■□□□ 1.05
SF3A1-202ENST00000411423 KAT6AQ92794 2004 aa21.62■■□□□ 1.05
SF3A1-202ENST00000411423 JAK2O60674 1132 aa21.62■■□□□ 1.05
SF3A1-202ENST00000411423 CDKL5O76039 1030 aa21.62■■□□□ 1.05
SF3A1-202ENST00000411423 CA3P07451 260 aa21.62■■□□□ 1.05
SF3A1-202ENST00000411423 USP11P51784 963 aa21.62■■□□□ 1.05
SF3A1-202ENST00000411423 ADGRE1Q14246 886 aa21.62■■□□□ 1.05
SF3A1-202ENST00000411423 EARS2Q5JPH6 523 aaKnown RBP21.62■■□□□ 1.05
SF3A1-202ENST00000411423 SWSAP1Q6NVH7 229 aa21.62■■□□□ 1.05
SF3A1-202ENST00000411423 RPAINQ86UA6 219 aa21.62■■□□□ 1.05
SF3A1-202ENST00000411423 NSUN7Q8NE18 718 aaKnown RBP21.62■■□□□ 1.05
SF3A1-202ENST00000411423 ORC3Q9UBD5 711 aaPredicted RBP21.62■■□□□ 1.05
SF3A1-202ENST00000411423 TRPC6Q9Y210 931 aa21.62■■□□□ 1.05
SF3A1-202ENST00000411423 ABHD14A-ACY1A0A1B0GW23 586 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 POTEB3A0JP26 581 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 LCHNA4D1U4 455 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 ZBTB42B2RXF5 422 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 FOSL2P15408 326 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 INF2Q27J81 1249 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 ZNF746Q6NUN9 644 aaPredicted RBP21.61■■□□□ 1.05
SF3A1-202ENST00000411423 POTEBQ6S5H4 581 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 MBOAT7Q96N66 472 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 SLC28A3Q9HAS3 691 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 ZNF302Q9NR11 478 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 TBC1D22BQ9NU19 505 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 MICAL3Q7RTP6 2002 aa21.61■■□□□ 1.05
SF3A1-202ENST00000411423 CYP3A7-CYP3A51PA0A087WV96 503 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 FAM205CA6NFA0 338 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 EPOPA6NHQ4 379 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 BACH1O14867 736 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 CYP3A7P24462 503 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 KCNJ6P48051 423 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 IKBKEQ14164 716 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 Q4G0T1 1027 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 PPP2R2DQ66LE6 453 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 GALNT17Q6IS24 598 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 MIS18BP1Q6P0N0 1132 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 TAF2Q6P1X5 1199 aa21.6■■□□□ 1.05
SF3A1-202ENST00000411423 FAM177A1Q8N128 213 aaPredicted RBP21.6■■□□□ 1.05
SF3A1-202ENST00000411423 SLC5A5Q92911 643 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms