RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 SIRT5Q9NXA8 310 aa6.87□□□□□ -1.31
HMGB3P19-201ENST00000403971 DTLQ9NZJ0 730 aa6.87□□□□□ -1.31
HMGB3P19-201ENST00000403971 MBD1Q9UIS9 605 aaPredicted RBP6.87□□□□□ -1.31
HMGB3P19-201ENST00000403971 FANCD2Q9BXW9 1451 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 RASSF10A6NK89 507 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 BRINP1O60477 761 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 FAHP16930 419 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 PTX3P26022 381 aaPredicted RBP6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 CDR1P51861 262 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 EPHB3P54753 998 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 ZNF174Q15697 407 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 ATP13A4Q4VNC1 1196 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 OLFML2BQ68BL8 750 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 TMEM132EQ6IEE7 984 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 LDHDQ86WU2 507 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 TTLL11Q8NHH1 800 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 COG1Q8WTW3 980 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 MS4A5Q9H3V2 200 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 PCIF1Q9H4Z3 704 aa6.86□□□□□ -1.31
HMGB3P19-201ENST00000403971 GPR39O43194 453 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 ZEB2O60315 1214 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 C8BP07358 591 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 MMEP08473 750 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 CPEP16870 476 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 THBS2P35442 1172 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 CR1LQ2VPA4 569 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 CATSPEREQ5SY80 951 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 TEPPQ6URK8 271 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 CD300LDQ6UXZ3 194 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 EFHBQ8N7U6 833 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 TOE1Q96GM8 510 aaKnown RBP6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 PDGFDQ9GZP0 370 aaPredicted RBP6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 TOMM22Q9NS69 142 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 FAM53CQ9NYF3 392 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 WASF3Q9UPY6 502 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 PCDHA5Q9Y5H7 936 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 SPO11Q9Y5K1 396 aa6.85□□□□□ -1.31
HMGB3P19-201ENST00000403971 PHLDB1Q86UU1 1377 aa6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 BIVM-ERCC5R4GMW8 1640 aa6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 IRS2Q9Y4H2 1338 aa6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 LCHNA4D1U4 455 aa6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 PEX10O60683 326 aa6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 ATF2P15336 505 aa6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 GJA4P35212 333 aa6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 ESRP1Q6NXG1 681 aaKnown RBP6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 CC2D1AQ6P1N0 951 aaPredicted RBP6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 STAG1Q8WVM7 1258 aa6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 GCM1Q9NP62 436 aa6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 VTA1Q9NP79 307 aa6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 APOBEC2Q9Y235 224 aaKnown RBP6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 CEP164Q9UPV0 1460 aa6.84□□□□□ -1.31
HMGB3P19-201ENST00000403971 ABCC8Q09428 1581 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 TEX51A0A1B0GUA7 166 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 FOXP2O15409 715 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 NCAM1P13591 858 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 MC4RP32245 332 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 GUCY2FP51841 1108 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 OCRLQ01968 901 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 CACNB2Q08289 660 aaPredicted RBP6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 RNF219Q5W0B1 726 aaPredicted RBP6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 CD276Q5ZPR3 534 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 MCTP1Q6DN14 999 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 HDGFL2Q7Z4V5 671 aaPredicted RBP6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 STK32CQ86UX6 486 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 C11orf74Q86VG3 221 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 PROSER1Q86XN7 944 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 IGDCC3Q8IVU1 814 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 ASB15Q8WXK1 588 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 ERCC4Q92889 916 aaPredicted RBP6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 SLC5A5Q92911 643 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 HOMER2Q9NSB8 354 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 WRNQ14191 1432 aaPredicted RBP eCLIP6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 TOP2BQ02880 1626 aa6.83□□□□□ -1.32
HMGB3P19-201ENST00000403971 KATNA1O75449 491 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 TMEM253P0C7T8 217 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 SDHAP31040 664 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 SMAD3P84022 425 aaKnown RBP6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 DBPQ10586 325 aaPredicted RBP6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 SMAD2Q15796 467 aaKnown RBP6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 XP32Q5T750 250 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 BROXQ5VW32 411 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 TMC5Q6UXY8 1006 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 LIPIQ6XZB0 460 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 SPATS2Q86XZ4 545 aaKnown RBP6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 FBXO15Q8NCQ5 510 aaPredicted RBP6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 CLRN3Q8NCR9 226 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 SMARCC2Q8TAQ2 1214 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 MZB1Q8WU39 189 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 CPA5Q8WXQ8 436 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 DDX11Q96FC9 970 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 TRIM8Q9BZR9 551 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 ZMAT4Q9H898 229 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 SLC39A2Q9NP94 309 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 ACSS2Q9NR19 701 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 SLC5A4Q9NY91 659 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 DDX56Q9NY93 547 aaKnown RBP6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 DNMBPQ6XZF7 1577 aa6.82□□□□□ -1.32
HMGB3P19-201ENST00000403971 PRKD3O94806 890 aa6.81□□□□□ -1.32
HMGB3P19-201ENST00000403971 LIMS1P48059 325 aa6.81□□□□□ -1.32
HMGB3P19-201ENST00000403971 NKX3-2P78367 333 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms