RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PHKA1P46020 1223 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 CACNB1Q02641 598 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 FAM69CQ0P6D2 419 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 USP4Q13107 963 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 WLSQ5T9L3 541 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 SPATA5Q8NB90 893 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 MTMR8Q96EF0 704 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 RPS6KC1Q96S38 1066 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 CRNKL1Q9BZJ0 848 aaKnown RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 PAIP2BQ9ULR5 123 aaKnown RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 COL4A3BPQ9Y5P4 624 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 PBRM1Q86U86 1689 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 SALL1Q9NSC2 1324 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 COL3A1P02461 1466 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 NRXN1Q9ULB1 1477 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 ABCC12Q96J65 1359 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 CCDC189A1A4V9 331 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 RASA4BC9J798 803 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 RASA4O43374 803 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 STARD3NLO95772 234 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 HSPA9P38646 679 aaKnown RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 ITIH3Q06033 890 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 XRCC4Q13426 336 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 CALCRLQ16602 461 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 FAM26FQ5R3K3 315 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 CRELD2Q6UXH1 353 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 SDCCAG8Q86SQ7 713 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 IQCKQ8N0W5 287 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 KIFAP3Q92845 792 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 HAO1Q9UJM8 370 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 SHPRHQ149N8 1683 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 TMEM120BA0PK00 339 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 GFPT2O94808 682 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 PRLRP16471 622 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 PLCG2P16885 1265 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 SERPINB3P29508 390 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 MDM2Q00987 491 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 ITIH4Q14624 930 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 HSP90AA5PQ58FG0 334 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 ARHGAP18Q8N392 663 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 RDH13Q8NBN7 331 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 PIGOQ8TEQ8 1089 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 EZH1Q92800 747 aaPredicted RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 TLR10Q9BXR5 811 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 ADAM33Q9BZ11 813 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 METTL5Q9NRN9 209 aaKnown RBP10.07□□□□□ -0.8
COL28A1-201ENST00000399429 PLAGL2Q9UPG8 496 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 JAG2Q9Y219 1238 aa10.07□□□□□ -0.8
COL28A1-201ENST00000399429 HSPA1LP34931 641 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 TRAPPC10P48553 1259 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 SCARF1Q14162 830 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 UBE3CQ15386 1083 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 MAP7D1Q3KQU3 841 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 PRM3Q9NNZ6 103 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 SEC31BQ9NQW1 1179 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 ARHGAP20Q9P2F6 1191 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 THRAP3Q9Y2W1 955 aaKnown RBP10.06□□□□□ -0.8
COL28A1-201ENST00000399429 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.06□□□□□ -0.8
COL28A1-201ENST00000399429 PRR36Q9H6K5 1346 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 KIF1BO60333 1816 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 AGTP01019 485 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 POTEJP0CG39 1038 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 ERVK-9P63128 1117 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 STK4Q13043 487 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 PSMD6Q15008 389 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 NME8Q8N427 588 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 GPR108Q9NPR9 543 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 GGA2Q9UJY4 613 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 ANGPTL2Q9UKU9 493 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 PDS5AQ29RF7 1337 aaKnown RBP10.06□□□□□ -0.8
COL28A1-201ENST00000399429 STK36Q9NRP7 1315 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 IRS4O14654 1257 aaPredicted RBP10.06□□□□□ -0.8
COL28A1-201ENST00000399429 TMCO4Q5TGY1 634 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 MIS18BP1Q6P0N0 1132 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 AGXT2Q9BYV1 514 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 SLITRK6Q9H5Y7 841 aa10.06□□□□□ -0.8
COL28A1-201ENST00000399429 TARBP1Q13395 1621 aaKnown RBP10.06□□□□□ -0.8
COL28A1-201ENST00000399429 PLEKHG3A1L390 1219 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 USP17L12C9JPN9 530 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 USP17L21D6R901 530 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 SPAG7O75391 227 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 IFNB1P01574 187 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 PYGLP06737 847 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 GRAMD1BQ3KR37 738 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 PDXDC1Q6P996 788 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 EPM2AIP1Q7L775 607 aaPredicted RBP10.05□□□□□ -0.8
COL28A1-201ENST00000399429 TRIM74Q86UV6 250 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 TRIM73Q86UV7 250 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 ELOA2Q8IYF1 753 aaPredicted RBP10.05□□□□□ -0.8
COL28A1-201ENST00000399429 FAM81AQ8TBF8 368 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 GLG1Q92896 1179 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 FAM161BQ96MY7 647 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 BZW2Q9Y6E2 419 aaKnown RBP10.05□□□□□ -0.8
COL28A1-201ENST00000399429 DNAJC6O75061 913 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 GNA14O95837 355 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 ATF2P15336 505 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 CLUL1Q15846 466 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 NT5DC1Q5TFE4 455 aa10.05□□□□□ -0.8
COL28A1-201ENST00000399429 TAB3Q8N5C8 712 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms