RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 MRPL47Q9HD33 250 aaKnown RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 GIMAP4Q9NUV9 329 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 GOLGA8CPA6NN73 597 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 TOM1O60784 492 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 TMEM191BP0C7N4 346 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 SERPINB3P29508 390 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 IFRD2Q12894 506 aaPredicted RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 PABPC4Q13310 644 aaKnown RBP eCLIP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 LRRC36Q1X8D7 754 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 TEDDM1Q5T9Z0 273 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 PRMT1Q99873 361 aaKnown RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 BABAM1Q9NWV8 329 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 THRAP3Q9Y2W1 955 aaKnown RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 IQGAP2Q13576 1575 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 EIF3HO15372 352 aaKnown RBP eCLIP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 KRT37O76014 449 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 SEC24DO94855 1032 aaPredicted RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 MDH1P40925 334 aaKnown RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 CNGA3Q16281 694 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 APOA5Q6Q788 366 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 CATSPER3Q86XQ3 398 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 NCLNQ969V3 563 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 ZBTB10Q96DT7 871 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 OSBPL5Q9H0X9 879 aaPredicted RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 TEKT2Q9UIF3 430 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 COL17A1Q9UMD9 1497 aaPredicted RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 LAD1O00515 517 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 PPP1R37O75864 691 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 HOXB7P09629 217 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 CARSP49589 748 aaKnown RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 SLC44A4Q53GD3 710 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 RYBPQ8N488 228 aaPredicted RBP12.72□□□□□ -0.37
SYNPO-202ENST00000394243 RASGRP4Q8TDF6 673 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 BTBD6Q96KE9 485 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 HLA-DPA1P20036 260 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 CCNE1P24864 410 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 PGM1P36871 562 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 ACAD11Q709F0 780 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 PTPRKQ15262 1439 aa12.72□□□□□ -0.37
SYNPO-202ENST00000394243 TCP11X1B4DZS4 312 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 PI4K2BG5E9Z4 385 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 NCK2O43639 380 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 NR1H3Q13133 447 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 TRIM60Q495X7 471 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 METTL13Q8N6R0 699 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 DDAH1O94760 285 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 YWHAHQ04917 246 aaPredicted RBP12.71□□□□□ -0.37
SYNPO-202ENST00000394243 TCP10Q12799 353 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 NR5A1Q13285 461 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 AK8Q96MA6 479 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 KIF9Q9HAQ2 790 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 CD248Q9HCU0 757 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 DIS3Q9Y2L1 958 aaKnown RBP12.71□□□□□ -0.37
SYNPO-202ENST00000394243 NESP48681 1621 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 MROH5Q6ZUA9 1318 aa12.71□□□□□ -0.37
SYNPO-202ENST00000394243 AP1B1Q10567 949 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 CYLC2Q14093 348 aaPredicted RBP12.71□□□□□ -0.38
SYNPO-202ENST00000394243 DNAJC24Q6P3W2 148 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 TRIM33Q9UPN9 1127 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 SRPRBQ9Y5M8 271 aaKnown RBP12.71□□□□□ -0.38
SYNPO-202ENST00000394243 ANO9A1A5B4 782 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 SPDYE2BA6NHP3 402 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 SORBS3O60504 671 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 CYP21A2P08686 494 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 SPDYE6P0CI01 402 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 MAP4P27816 1152 aaKnown RBP12.71□□□□□ -0.38
SYNPO-202ENST00000394243 HOXC9P31274 260 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 SERPINB4P48594 390 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 MED21Q13503 144 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 SH2D3CQ8N5H7 860 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 CALR3Q96L12 384 aaKnown RBP12.71□□□□□ -0.38
SYNPO-202ENST00000394243 MRPL40Q9NQ50 206 aaKnown RBP12.71□□□□□ -0.38
SYNPO-202ENST00000394243 STAP2Q9UGK3 403 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 SH3TC1Q8TE82 1336 aa12.71□□□□□ -0.38
SYNPO-202ENST00000394243 TESPA1A2RU30 521 aaPredicted RBP12.7□□□□□ -0.38
SYNPO-202ENST00000394243 ABL1P00519 1130 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 TRAPPC10P48553 1259 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 MRPL28Q13084 256 aaKnown RBP12.7□□□□□ -0.38
SYNPO-202ENST00000394243 ANKRD7Q92527 254 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 RABGAP1LQ5R372 815 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 PCIF1Q9H4Z3 704 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 LGR6Q9HBX8 967 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 ATP11BQ9Y2G3 1177 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 ADGRL1O94910 1474 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 GOLGA8MH3BSY2 632 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 DEAF1O75398 565 aaPredicted RBP12.7□□□□□ -0.38
SYNPO-202ENST00000394243 TBC1D10BQ4KMP7 808 aaPredicted RBP12.7□□□□□ -0.38
SYNPO-202ENST00000394243 BZW1Q7L1Q6 419 aaKnown RBP12.7□□□□□ -0.38
SYNPO-202ENST00000394243 NGLY1Q96IV0 654 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 MMP1P03956 469 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 GFPT1Q06210 699 aaPredicted RBP12.7□□□□□ -0.38
SYNPO-202ENST00000394243 MORF4L2Q15014 288 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 GRAMD1AQ96CP6 724 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 POGZQ7Z3K3 1410 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 NEURL1BA8MQ27 555 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 ZNF589Q86UQ0 364 aaPredicted RBP12.7□□□□□ -0.38
SYNPO-202ENST00000394243 CDC26Q8NHZ8 85 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 DLGAP2Q9P1A6 1054 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 FBXL5Q9UKA1 691 aa12.7□□□□□ -0.38
SYNPO-202ENST00000394243 SYNGAP1Q96PV0 1343 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms