RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 PLXNA1Q9UIW2 1896 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 POTEFA5A3E0 1075 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 EIF3JO75822 258 aaKnown RBP13.84□□□□□ -0.19
CIITA-202ENST00000381835 STAM2O75886 525 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 ADORA2AP29274 412 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 DPYDQ12882 1025 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 SEMA3FQ13275 785 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 MCM6Q14566 821 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 POTEGQ6S5H5 508 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 SEPT14Q6ZU15 432 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 LARP4BQ92615 738 aaKnown RBP13.84□□□□□ -0.19
CIITA-202ENST00000381835 L2HGDHQ9H9P8 463 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 KBTBD4Q9NVX7 518 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 STK17AQ9UEE5 414 aa13.84□□□□□ -0.19
CIITA-202ENST00000381835 MAFGO15525 162 aa13.83□□□□□ -0.2
CIITA-202ENST00000381835 GTPBP6O43824 516 aaPredicted RBP13.83□□□□□ -0.2
CIITA-202ENST00000381835 SPATA31C1P0DKV0 1188 aa13.83□□□□□ -0.2
CIITA-202ENST00000381835 RPA1P27694 616 aa13.83□□□□□ -0.2
CIITA-202ENST00000381835 KCNJ6P48051 423 aa13.83□□□□□ -0.2
CIITA-202ENST00000381835 TERF2Q15554 542 aa13.83□□□□□ -0.2
CIITA-202ENST00000381835 HYIQ5T013 277 aa13.83□□□□□ -0.2
CIITA-202ENST00000381835 GPR142Q7Z601 462 aa13.83□□□□□ -0.2
CIITA-202ENST00000381835 FGD4Q96M96 766 aa13.83□□□□□ -0.2
CIITA-202ENST00000381835 TBC1D22BQ9NU19 505 aa13.83□□□□□ -0.2
CIITA-202ENST00000381835 MAN1B1Q9UKM7 699 aa13.83□□□□□ -0.2
CIITA-202ENST00000381835 SAMM50Q9Y512 469 aa13.83□□□□□ -0.2
CIITA-202ENST00000381835 B4DLN1 442 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 E9PMD0 336 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 TUBB4AP04350 444 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 EDNRBP24530 442 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 SARSP49591 514 aaKnown RBP13.82□□□□□ -0.2
CIITA-202ENST00000381835 FANCCQ00597 558 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 CTTNQ14247 550 aaKnown RBP13.82□□□□□ -0.2
CIITA-202ENST00000381835 NCAPHQ15003 741 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 ERCC6LQ2NKX8 1250 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 SV2BQ7L1I2 683 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 MIER3Q7Z3K6 550 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 TPH2Q8IWU9 490 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 RAD54LQ92698 747 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 DYDC2Q96IM9 177 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 CDHR1Q96JP9 859 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 MPHOSPH6Q99547 160 aaKnown RBP13.82□□□□□ -0.2
CIITA-202ENST00000381835 MAGEF1Q9HAY2 307 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 FAM53CQ9NYF3 392 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 STK24Q9Y6E0 443 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 STRNO43815 780 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 SORBS3O60504 671 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 TLR2O60603 784 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 SSBP05455 408 aaKnown RBP eCLIP13.82□□□□□ -0.2
CIITA-202ENST00000381835 DEFB115Q30KQ5 88 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 NT5DC1Q5TFE4 455 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 B3GNT9Q6UX72 402 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 SPATA20Q8TB22 786 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 HSD17B14Q9BPX1 270 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 BCAS3Q9H6U6 928 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 ZFYVE28Q9HCC9 887 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 TCEAL9Q9UHQ7 104 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 ADGRA2Q96PE1 1338 aa13.82□□□□□ -0.2
CIITA-202ENST00000381835 SPATA31C2B4DYI2 1134 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 IKBKBO14920 756 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 COBLO75128 1261 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 SLITRK3O94933 977 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 MAPK4P31152 587 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 TM4SF4P48230 202 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 TAF3Q5VWG9 929 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 POLR3CQ9BUI4 534 aaPredicted RBP13.81□□□□□ -0.2
CIITA-202ENST00000381835 CCP110O43303 1012 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 AOC2O75106 756 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 KCNA2P16389 499 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 BMP6P22004 513 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 PSMC6P62333 389 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 AMPD3Q01432 767 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 SP4Q02446 784 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 CRHR2Q13324 411 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 EPHA7Q15375 998 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 PLEKHH3Q7Z736 793 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 DPP9Q86TI2 863 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 BANK1Q8NDB2 785 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 GSDMAQ96QA5 445 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 ZNF446Q9NWS9 450 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 DNM3Q9UQ16 869 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.81□□□□□ -0.2
CIITA-202ENST00000381835 LRRC37A2A6NM11 1700 aa13.81□□□□□ -0.2
CIITA-202ENST00000381835 SLC26A4O43511 780 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 SERPINC1P01008 464 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 RPN1P04843 607 aaKnown RBP13.8□□□□□ -0.2
CIITA-202ENST00000381835 NOGQ13253 232 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 BMS1Q14692 1282 aaKnown RBP13.8□□□□□ -0.2
CIITA-202ENST00000381835 ABRAQ8N0Z2 381 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 CAPNS2Q96L46 248 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 TRIM9Q9C026 710 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 TUFT1Q9NNX1 390 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 CREBZFQ9NS37 354 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 WDR81Q562E7 1941 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 MYMKA6NI61 221 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 CBFA2T2O43439 604 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 CCNE2O96020 404 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 MYL1P05976 194 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 ATP1A3P13637 1013 aa13.8□□□□□ -0.2
CIITA-202ENST00000381835 H2AFXP16104 143 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms