RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 MCTP1Q6DN14 999 aa15.1■□□□□ 0.01
VPS28-202ENST00000377348 SMAP1Q8IYB5 467 aaPredicted RBP15.1■□□□□ 0.01
VPS28-202ENST00000377348 DHX38Q92620 1227 aaKnown RBP15.1■□□□□ 0.01
VPS28-202ENST00000377348 WNT8BQ93098 351 aa15.1■□□□□ 0.01
VPS28-202ENST00000377348 SNX21Q969T3 373 aa15.1■□□□□ 0.01
VPS28-202ENST00000377348 NAP1L4Q99733 375 aaKnown RBP15.1■□□□□ 0.01
VPS28-202ENST00000377348 WNT8AQ9H1J5 351 aa15.1■□□□□ 0.01
VPS28-202ENST00000377348 ZNF302Q9NR11 478 aa15.1■□□□□ 0.01
VPS28-202ENST00000377348 PCDHA10Q9Y5I2 948 aa15.1■□□□□ 0.01
VPS28-202ENST00000377348 WDR64B1ANS9 1081 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 H3BQV1 296 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 PSAPP07602 524 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 CSF2RAP15509 400 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 U2AF2P26368 475 aaKnown RBP eCLIP15.09■□□□□ 0.01
VPS28-202ENST00000377348 EPHB4P54760 987 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 IGBP1P78318 339 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 PPFIA1Q13136 1202 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 NBR1Q14596 966 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 MFSD5Q6N075 450 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 PDXDC2PQ6P474 469 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 B3GNT9Q6UX72 402 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 PLPPR4Q7Z2D5 763 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 TRMT1LQ7Z2T5 733 aaKnown RBP15.09■□□□□ 0.01
VPS28-202ENST00000377348 LMBR1Q8WVP7 490 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 ATP6V0A1Q93050 837 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 SCLYQ96I15 445 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 UBE2OQ9C0C9 1292 aaKnown RBP15.09■□□□□ 0.01
VPS28-202ENST00000377348 DISC1Q9NRI5 854 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 GABBR1Q9UBS5 961 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 VAV3Q9UKW4 847 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 TRPC6Q9Y210 931 aa15.09■□□□□ 0.01
VPS28-202ENST00000377348 MARCH6O60337 910 aa15.08■□□□□ 0
VPS28-202ENST00000377348 INSRRP14616 1297 aa15.08■□□□□ 0
VPS28-202ENST00000377348 ATP4AP20648 1035 aa15.08■□□□□ 0
VPS28-202ENST00000377348 MCM7P33993 719 aa15.08■□□□□ 0
VPS28-202ENST00000377348 BMP8BP34820 402 aa15.08■□□□□ 0
VPS28-202ENST00000377348 FPGSQ05932 587 aa15.08■□□□□ 0
VPS28-202ENST00000377348 ZNF174Q15697 407 aa15.08■□□□□ 0
VPS28-202ENST00000377348 GRIK4Q16099 956 aa15.08■□□□□ 0
VPS28-202ENST00000377348 UGCGQ16739 394 aa15.08■□□□□ 0
VPS28-202ENST00000377348 FAM160B1Q5W0V3 765 aa15.08■□□□□ 0
VPS28-202ENST00000377348 MIER3Q7Z3K6 550 aa15.08■□□□□ 0
VPS28-202ENST00000377348 HSCBQ8IWL3 235 aa15.08■□□□□ 0
VPS28-202ENST00000377348 AFAP1L1Q8TED9 768 aa15.08■□□□□ 0
VPS28-202ENST00000377348 TRAPPC12Q8WVT3 735 aa15.08■□□□□ 0
VPS28-202ENST00000377348 ZBTB10Q96DT7 871 aa15.08■□□□□ 0
VPS28-202ENST00000377348 FAM20AQ96MK3 541 aa15.08■□□□□ 0
VPS28-202ENST00000377348 TMEM60Q9H2L4 133 aa15.08■□□□□ 0
VPS28-202ENST00000377348 LAMA2P24043 3122 aaKnown RBP15.08■□□□□ 0
VPS28-202ENST00000377348 TRIP12Q14669 1992 aaPredicted RBP15.07■□□□□ 0
VPS28-202ENST00000377348 POTEB3A0JP26 581 aa15.07■□□□□ 0
VPS28-202ENST00000377348 EML1O00423 815 aa15.07■□□□□ 0
VPS28-202ENST00000377348 TBX3O15119 743 aa15.07■□□□□ 0
VPS28-202ENST00000377348 NEMFO60524 1076 aa15.07■□□□□ 0
VPS28-202ENST00000377348 SFNP31947 248 aa15.07■□□□□ 0
VPS28-202ENST00000377348 TOB1P50616 345 aaPredicted RBP15.07■□□□□ 0
VPS28-202ENST00000377348 JAK3P52333 1124 aa15.07■□□□□ 0
VPS28-202ENST00000377348 ADAM17P78536 824 aa15.07■□□□□ 0
VPS28-202ENST00000377348 PTK7Q13308 1070 aa15.07■□□□□ 0
VPS28-202ENST00000377348 CALCRLQ16602 461 aa15.07■□□□□ 0
VPS28-202ENST00000377348 TRIM71Q2Q1W2 868 aaKnown RBP15.07■□□□□ 0
VPS28-202ENST00000377348 TTC38Q5R3I4 469 aa15.07■□□□□ 0
VPS28-202ENST00000377348 POTEBQ6S5H4 581 aa15.07■□□□□ 0
VPS28-202ENST00000377348 SERINC5Q86VE9 423 aa15.07■□□□□ 0
VPS28-202ENST00000377348 TMEM199Q8N511 208 aa15.07■□□□□ 0
VPS28-202ENST00000377348 INTS4Q96HW7 963 aaKnown RBP15.07■□□□□ 0
VPS28-202ENST00000377348 MAFBQ9Y5Q3 323 aaPredicted RBP15.07■□□□□ 0
VPS28-202ENST00000377348 NRCAMQ92823 1304 aa15.07■□□□□ 0
VPS28-202ENST00000377348 IGSF9BQ9UPX0 1349 aa15.07■□□□□ 0
VPS28-202ENST00000377348 ZNF862O60290 1169 aa15.06■□□□□ 0
VPS28-202ENST00000377348 BAG4O95429 457 aaKnown RBP15.06■□□□□ 0
VPS28-202ENST00000377348 ACRP10323 421 aa15.06■□□□□ 0
VPS28-202ENST00000377348 GNAT1P11488 350 aa15.06■□□□□ 0
VPS28-202ENST00000377348 CKBP12277 381 aa15.06■□□□□ 0
VPS28-202ENST00000377348 SPIRE1Q08AE8 756 aa15.06■□□□□ 0
VPS28-202ENST00000377348 PPP2R5CQ13362 524 aa15.06■□□□□ 0
VPS28-202ENST00000377348 BFSP2Q13515 415 aa15.06■□□□□ 0
VPS28-202ENST00000377348 C9orf50Q5SZB4 431 aa15.06■□□□□ 0
VPS28-202ENST00000377348 MARCH8Q5T0T0 291 aa15.06■□□□□ 0
VPS28-202ENST00000377348 RUFY4Q6ZNE9 571 aa15.06■□□□□ 0
VPS28-202ENST00000377348 C16orf59Q7L2K0 433 aa15.06■□□□□ 0
VPS28-202ENST00000377348 CKAP2LQ8IYA6 745 aa15.06■□□□□ 0
VPS28-202ENST00000377348 BANK1Q8NDB2 785 aa15.06■□□□□ 0
VPS28-202ENST00000377348 CAGE1Q8TC20 777 aa15.06■□□□□ 0
VPS28-202ENST00000377348 NOL7Q9UMY1 257 aaKnown RBP15.06■□□□□ 0
VPS28-202ENST00000377348 VPS37CA5D8V6 355 aaPredicted RBP15.05■□□□□ -0
VPS28-202ENST00000377348 PITPNM1O00562 1244 aa15.05■□□□□ -0
VPS28-202ENST00000377348 TXKP42681 527 aa15.05■□□□□ -0
VPS28-202ENST00000377348 SLC26A2P50443 739 aa15.05■□□□□ -0
VPS28-202ENST00000377348 PPIGQ13427 754 aaKnown RBP eCLIP15.05■□□□□ -06e-8■□□□□ 10.8
VPS28-202ENST00000377348 SHHQ15465 462 aa15.05■□□□□ -0
VPS28-202ENST00000377348 ZNF618Q5T7W0 954 aa15.05■□□□□ -0
VPS28-202ENST00000377348 NCAPH2Q6IBW4 605 aa15.05■□□□□ -0
VPS28-202ENST00000377348 SLFN12Q8IYM2 578 aa15.05■□□□□ -0
VPS28-202ENST00000377348 TDHQ8IZJ6 230 aa15.05■□□□□ -0
VPS28-202ENST00000377348 CCDC155Q8N6L0 562 aa15.05■□□□□ -0
VPS28-202ENST00000377348 RETREG2Q8NC44 543 aa15.05■□□□□ -0
VPS28-202ENST00000377348 ATP8B4Q8TF62 1192 aa15.05■□□□□ -0
VPS28-202ENST00000377348 VWCEQ96DN2 955 aa15.05■□□□□ -0
VPS28-202ENST00000377348 MTMR9Q96QG7 549 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms