RNA–Protein interactions for RNA: ENST00000375254.7

UBR4-204, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBR4, Length 15,906 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-204ENST00000375254 IGBP1P78318 339 aa7.1□□□□□ -1.27
UBR4-204ENST00000375254 CWF19L1Q69YN2 538 aaKnown RBP7.1□□□□□ -1.27
UBR4-204ENST00000375254 MCM8Q9UJA3 840 aa7.1□□□□□ -1.27
UBR4-204ENST00000375254 EXOC3O60645 756 aa7.1□□□□□ -1.27
UBR4-204ENST00000375254 CCNCP24863 283 aa7.1□□□□□ -1.27
UBR4-204ENST00000375254 GSTT1P30711 240 aa7.1□□□□□ -1.27
UBR4-204ENST00000375254 NT5C2P49902 561 aa7.1□□□□□ -1.27
UBR4-204ENST00000375254 MYOCDQ8IZQ8 938 aa7.1□□□□□ -1.27
UBR4-204ENST00000375254 SLC26A7Q8TE54 656 aa7.1□□□□□ -1.27
UBR4-204ENST00000375254 POP5Q969H6 163 aaKnown RBP7.1□□□□□ -1.27
UBR4-204ENST00000375254 SCN3BQ9NY72 215 aa7.1□□□□□ -1.27
UBR4-204ENST00000375254 CTNND2Q9UQB3 1225 aa7.1□□□□□ -1.27
UBR4-204ENST00000375254 ADGRA3Q8IWK6 1321 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 RANBP6O60518 1105 aaKnown RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 TRIM49P0CI25 452 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 TRIM49CP0CI26 452 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 DNAJC3Q13217 504 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 CAPRIN1Q14444 709 aaKnown RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 INPP5AQ14642 412 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 KDM7AQ6ZMT4 941 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 BABAM1Q9NWV8 329 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 FESP07332 822 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 XRCC5P13010 732 aaKnown RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 CDH2P19022 906 aaPredicted RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 CDC27P30260 824 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 RABGAP1LQ5R372 815 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 KLHL38Q2WGJ6 581 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 CASC4Q6P4E1 433 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 ZNF579Q8NAF0 562 aaKnown RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 TAB2Q9NYJ8 693 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 SPATA4Q8NEY3 305 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 CENPXA8MT69 81 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 MIF4GDA9UHW6 222 aaKnown RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 IFNAR2P48551 515 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 RASSF7Q02833 373 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 PDCD4Q53EL6 469 aaKnown RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 RINT1Q6NUQ1 792 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 SFR1Q86XK3 245 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 DNM3Q9UQ16 869 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 IL12AP29459 219 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 IGHMBP2P38935 993 aaKnown RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 NEK10Q6ZWH5 1172 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 ANKRD13AQ8IZ07 590 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 NLRP4Q96MN2 994 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 NFU1Q9UMS0 254 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 GNAT3A8MTJ3 354 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 TCP11X1B4DZS4 312 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 YWHAEP62258 255 aaKnown RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 SUN5Q8TC36 379 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 LRRC39Q96DD0 335 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 ZWILCHQ9H900 591 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 SMAPO00193 183 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 MEIS1O00470 390 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 AP1G2O75843 785 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 DEXIO95424 95 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 ARFIP2P53365 341 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 WASHC5Q12768 1159 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 ARHGAP27Q6ZUM4 889 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 PDIK1LQ8N165 341 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 ANKRD36BP1Q96IX9 119 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 NHEJ1Q9H9Q4 299 aaPredicted RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 CACNA2D1P54289 1103 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 PURAQ00577 322 aaKnown RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 MICU3Q86XE3 530 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 MRPL50Q8N5N7 158 aaKnown RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 RTL3Q8N8U3 475 aaKnown RBP7.09□□□□□ -1.27
UBR4-204ENST00000375254 PARVAQ9NVD7 372 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 L1RE1Q9UN81 338 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 TRIM24O15164 1050 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 STK4Q13043 487 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 PTGISQ16647 500 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 NOSTRINQ8IVI9 506 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 CCDC33Q8N5R6 958 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 FBXL13Q8NEE6 735 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 SPATA17Q96L03 361 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 EDEM3Q9BZQ6 932 aa7.09□□□□□ -1.27
UBR4-204ENST00000375254 GTPBP6O43824 516 aaPredicted RBP7.09□□□□□ -1.28
UBR4-204ENST00000375254 MED26O95402 600 aa7.09□□□□□ -1.28
UBR4-204ENST00000375254 ZNF280DQ6N043 979 aa7.09□□□□□ -1.28
UBR4-204ENST00000375254 ATL2Q8NHH9 583 aa7.09□□□□□ -1.28
UBR4-204ENST00000375254 NT5C3AQ9H0P0 336 aa7.09□□□□□ -1.28
UBR4-204ENST00000375254 KCND1Q9NSA2 647 aa7.09□□□□□ -1.28
UBR4-204ENST00000375254 IDH3BO43837 385 aa7.09□□□□□ -1.28
UBR4-204ENST00000375254 SLC5A1P13866 664 aa7.09□□□□□ -1.28
UBR4-204ENST00000375254 RIPK1Q13546 671 aa7.09□□□□□ -1.28
UBR4-204ENST00000375254 RSPH1Q8WYR4 309 aa7.09□□□□□ -1.28
UBR4-204ENST00000375254 CCDC85AQ96PX6 553 aaPredicted RBP7.09□□□□□ -1.28
UBR4-204ENST00000375254 SLC10A4Q96EP9 437 aa7.08□□□□□ -1.28
UBR4-204ENST00000375254 CABP5Q9NP86 173 aa7.08□□□□□ -1.28
UBR4-204ENST00000375254 FAM207AQ9NSI2 230 aaPredicted RBP7.08□□□□□ -1.28
UBR4-204ENST00000375254 PLEKHG2Q9H7P9 1386 aa7.08□□□□□ -1.28
UBR4-204ENST00000375254 STARD3NLO95772 234 aa7.08□□□□□ -1.28
UBR4-204ENST00000375254 RASA3Q14644 834 aa7.08□□□□□ -1.28
UBR4-204ENST00000375254 RIBC1Q8N443 379 aaPredicted RBP7.08□□□□□ -1.28
UBR4-204ENST00000375254 RIN3Q8TB24 985 aa7.08□□□□□ -1.28
UBR4-204ENST00000375254 PARD3BQ8TEW8 1205 aa7.08□□□□□ -1.28
UBR4-204ENST00000375254 PHACTR3Q96KR7 559 aa7.08□□□□□ -1.28
UBR4-204ENST00000375254 NEUROG2Q9H2A3 272 aa7.08□□□□□ -1.28
UBR4-204ENST00000375254 SLC12A5Q9H2X9 1139 aa7.08□□□□□ -1.28
UBR4-204ENST00000375254 CD248Q9HCU0 757 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms