RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ELF2Q15723 593 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 TMEM63BQ5T3F8 832 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 PDXDC2PQ6P474 469 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 TXLNBQ8N3L3 684 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 NSUN6Q8TEA1 469 aaKnown RBP15.9■□□□□ 0.14
HMGA1-203ENST00000374116 PDCD2LQ9BRP1 358 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 ANO3Q9BYT9 981 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 TMEM60Q9H2L4 133 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 PDGFCQ9NRA1 345 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 ADD3Q9UEY8 706 aaKnown RBP15.9■□□□□ 0.14
HMGA1-203ENST00000374116 CCP110O43303 1012 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 NR3C2P08235 984 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 PRKAR2AP13861 404 aaKnown RBP15.89■□□□□ 0.13
HMGA1-203ENST00000374116 CCND3P30281 292 aaPredicted RBP15.89■□□□□ 0.13
HMGA1-203ENST00000374116 PRPHP41219 470 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 RAD51AP2Q09MP3 1159 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 SPATA1Q5VX52 437 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 TRPV1Q8NER1 839 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 DNERQ8NFT8 737 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.89■□□□□ 0.13
HMGA1-203ENST00000374116 DIS3Q9Y2L1 958 aaKnown RBP15.89■□□□□ 0.13
HMGA1-203ENST00000374116 FHOD1Q9Y613 1164 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 MYH7BA7E2Y1 1941 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 ERICH4A6NGS2 130 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 GTPBP6O43824 516 aaPredicted RBP15.89■□□□□ 0.13
HMGA1-203ENST00000374116 CNGA1P29973 690 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 PRMT2P55345 433 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 PDE4DQ08499 809 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 CUL4BQ13620 913 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 E4F1Q66K89 784 aaPredicted RBP15.89■□□□□ 0.13
HMGA1-203ENST00000374116 OLFML2BQ68BL8 750 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 LENG1Q96BZ8 264 aaPredicted RBP15.89■□□□□ 0.13
HMGA1-203ENST00000374116 MED15Q96RN5 788 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 TMX1Q9H3N1 280 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 INTS13Q9NVM9 706 aa15.89■□□□□ 0.13
HMGA1-203ENST00000374116 TRMT1Q9NXH9 659 aaKnown RBP15.89■□□□□ 0.13
HMGA1-203ENST00000374116 MAP3K20Q9NYL2 800 aaKnown RBP15.89■□□□□ 0.13
HMGA1-203ENST00000374116 EDIL3O43854 480 aa15.88■□□□□ 0.13
HMGA1-203ENST00000374116 HMGCRP04035 888 aa15.88■□□□□ 0.13
HMGA1-203ENST00000374116 MRPS9P82933 396 aaKnown RBP15.88■□□□□ 0.13
HMGA1-203ENST00000374116 TBX2Q13207 712 aaPredicted RBP15.88■□□□□ 0.13
HMGA1-203ENST00000374116 ORC2Q13416 577 aaPredicted RBP15.88■□□□□ 0.13
HMGA1-203ENST00000374116 NONOQ15233 471 aaKnown RBP eCLIP15.88■□□□□ 0.13
HMGA1-203ENST00000374116 DTHD1Q6ZMT9 781 aa15.88■□□□□ 0.13
HMGA1-203ENST00000374116 TRMT44Q8IYL2 757 aaKnown RBP15.88■□□□□ 0.13
HMGA1-203ENST00000374116 SLAIN1Q8ND83 568 aa15.88■□□□□ 0.13
HMGA1-203ENST00000374116 CYP2W1Q8TAV3 490 aa15.88■□□□□ 0.13
HMGA1-203ENST00000374116 PXYLP1Q8TE99 480 aa15.88■□□□□ 0.13
HMGA1-203ENST00000374116 MTRQ99707 1265 aa15.88■□□□□ 0.13
HMGA1-203ENST00000374116 UBXN6Q9BZV1 441 aa15.88■□□□□ 0.13
HMGA1-203ENST00000374116 SORBS3O60504 671 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 IGHA2P01877 340 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 TEX35Q5T0J7 233 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 MFSD14CQ5VZR4 134 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 MAMDC4Q6UXC1 1216 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 SEPT14Q6ZU15 432 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 RMND1Q9NWS8 449 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 RPTORQ8N122 1335 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 LRRC37A2A6NM11 1700 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.87■□□□□ 0.13
HMGA1-203ENST00000374116 ASB14A6NK59 587 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 PPP1R3GB7ZBB8 358 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 ADCY6O43306 1168 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 ZRANB2O95218 330 aaKnown RBP eCLIP15.87■□□□□ 0.13
HMGA1-203ENST00000374116 PKN2Q16513 984 aaKnown RBP15.87■□□□□ 0.13
HMGA1-203ENST00000374116 GJC2Q5T442 439 aaPredicted RBP15.87■□□□□ 0.13
HMGA1-203ENST00000374116 SPECC1LQ69YQ0 1117 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 ZNF467Q7Z7K2 595 aaPredicted RBP15.87■□□□□ 0.13
HMGA1-203ENST00000374116 NEK8Q86SG6 692 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 SAMD3Q8N6K7 520 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 TBCKQ8TEA7 893 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 CCSER1Q9C0I3 900 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 KATNBL1Q9H079 304 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 UNC93B1Q9H1C4 597 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 SAMSN1Q9NSI8 373 aaKnown RBP15.87■□□□□ 0.13
HMGA1-203ENST00000374116 SYNRGQ9UMZ2 1314 aa15.87■□□□□ 0.13
HMGA1-203ENST00000374116 MKI67P46013 3256 aaKnown RBP15.86■□□□□ 0.13
HMGA1-203ENST00000374116 A0A1B0GTH6 734 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 RGS20O76081 388 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 CHRM1P11229 460 aaPredicted RBP15.86■□□□□ 0.13
HMGA1-203ENST00000374116 CD44P16070 742 aaKnown RBP15.86■□□□□ 0.13
HMGA1-203ENST00000374116 EDNRBP24530 442 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 CASP1P29466 404 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 ARHGAP4P98171 946 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 ACVR2BQ13705 512 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 NR1I3Q14994 352 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 VSIG10LQ86VR7 867 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 PLCD3Q8N3E9 789 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 ZNF592Q92610 1267 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 PPP1R13BQ96KQ4 1090 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 CTAGE1Q96RT6 745 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 GLT8D2Q9H1C3 349 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 SYNGAP1Q96PV0 1343 aa15.86■□□□□ 0.13
HMGA1-203ENST00000374116 ZNF865P0CJ78 1059 aaPredicted RBP15.85■□□□□ 0.13
HMGA1-203ENST00000374116 PNMA6AP0CW24 399 aaPredicted RBP15.85■□□□□ 0.13
HMGA1-203ENST00000374116 CYBAP13498 195 aa15.85■□□□□ 0.13
HMGA1-203ENST00000374116 ADCYAP1R1P41586 468 aa15.85■□□□□ 0.13
HMGA1-203ENST00000374116 PLA2G4AP47712 749 aa15.85■□□□□ 0.13
HMGA1-203ENST00000374116 AP3B2Q13367 1082 aa15.85■□□□□ 0.13
HMGA1-203ENST00000374116 STXBP2Q15833 593 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms