RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 MCM2P49736 904 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 ERVK-24P63145 666 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 C19orf57Q0VDD7 668 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 SNX17Q15036 470 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 TTF1Q15361 905 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-201ENST00000355766 MFSD14CQ5VZR4 134 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 PLEKHH3Q7Z736 793 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 CLEC10AQ8IUN9 316 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 CCDC82Q8N4S0 544 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 KBTBD3Q8NAB2 608 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 RILPL2Q969X0 211 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 RNPC3Q96LT9 517 aaKnown RBP8.22□□□□□ -1.09
VPS13A-201ENST00000355766 UHRF1Q96T88 793 aaPredicted RBP8.22□□□□□ -1.09
VPS13A-201ENST00000355766 KRTAP4-12Q9BQ66 201 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 FAM83CQ9BQN1 747 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 DBNDD2Q9BQY9 259 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS13A-201ENST00000355766 AS3MTQ9HBK9 375 aa8.22□□□□□ -1.09
VPS13A-201ENST00000355766 DNAH12Q6ZR08 3092 aa8.21□□□□□ -1.09
VPS13A-201ENST00000355766 DOCK3Q8IZD9 2030 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 PRR19A6NJB7 356 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 PHACTR2O75167 634 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 HSPA4P34932 840 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 CAP2P40123 477 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 TRIM60Q495X7 471 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 TSHZ3Q63HK5 1081 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 MCTP1Q6DN14 999 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 BEND4Q6ZU67 534 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 VN1R5Q7Z5H4 357 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 DZIP1Q86YF9 867 aaKnown RBP8.21□□□□□ -1.1
VPS13A-201ENST00000355766 ZGPATQ8N5A5 531 aaKnown RBP8.21□□□□□ -1.1
VPS13A-201ENST00000355766 BSNDQ8WZ55 320 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 KCNB2Q92953 911 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 ASB2Q96Q27 587 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 P2RX7Q99572 595 aaKnown RBP8.21□□□□□ -1.1
VPS13A-201ENST00000355766 FSD1Q9BTV5 496 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 CCDC8Q9H0W5 538 aaPredicted RBP8.21□□□□□ -1.1
VPS13A-201ENST00000355766 GNL3LQ9NVN8 582 aaKnown RBP8.21□□□□□ -1.1
VPS13A-201ENST00000355766 TMOD4Q9NZQ9 345 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 FLRT1Q9NZU1 646 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 HMG20BQ9P0W2 317 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 RBPJLQ9UBG7 517 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 FOXD3Q9UJU5 478 aaPredicted RBP8.21□□□□□ -1.1
VPS13A-201ENST00000355766 DENND2AQ9ULE3 1009 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 MROH7-TTC4A0A0A0MT08 1334 aa8.21□□□□□ -1.1
VPS13A-201ENST00000355766 TRIM43BA6NCK2 446 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 KBTBD13C9JR72 458 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 CYBAP13498 195 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 CNGA1P29973 690 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 ARL4DP49703 201 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 BACE1P56817 501 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 RHBDL3P58872 404 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 IKBKEQ14164 716 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 RRP1BQ14684 758 aaKnown RBP8.2□□□□□ -1.1
VPS13A-201ENST00000355766 PHLDB3Q6NSJ2 640 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 ZSCAN25Q6NSZ9 544 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 SLC39A5Q6ZMH5 540 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 HSCBQ8IWL3 235 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 CCAR1Q8IX12 1150 aaKnown RBP8.2□□□□□ -1.1
VPS13A-201ENST00000355766 TRIM43Q96BQ3 446 aaPredicted RBP8.2□□□□□ -1.1
VPS13A-201ENST00000355766 KIF2CQ99661 725 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 PAGR1Q9BTK6 254 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 WDR18Q9BV38 432 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 C1QTNF1Q9BXJ1 281 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS13A-201ENST00000355766 KCNF1Q9H3M0 494 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 CWC22Q9HCG8 908 aaKnown RBP8.2□□□□□ -1.1
VPS13A-201ENST00000355766 ANO2Q9NQ90 1003 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 HELLSQ9NRZ9 838 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 PAG1Q9NWQ8 432 aa8.2□□□□□ -1.1
VPS13A-201ENST00000355766 ATAD5Q96QE3 1844 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 CARNS1A5YM72 827 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 MEGF11A6BM72 1044 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 FZD6O60353 706 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 HOXC6P09630 235 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 EDN3P14138 238 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 PHKA1P46020 1223 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 EPHB4P54760 987 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 MRPS5P82675 430 aaKnown RBP8.19□□□□□ -1.1
VPS13A-201ENST00000355766 TTC39AQ5SRH9 613 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 AKNAD1Q5T1N1 836 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 GJC2Q5T442 439 aaPredicted RBP8.19□□□□□ -1.1
VPS13A-201ENST00000355766 GORABQ5T7V8 394 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 FDX2Q6P4F2 183 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 TRPV1Q8NER1 839 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 SNX29Q8TEQ0 813 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 EDC3Q96F86 508 aaKnown RBP8.19□□□□□ -1.1
VPS13A-201ENST00000355766 TM6SF1Q9BZW5 370 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 LSG1Q9H089 658 aaKnown RBP8.19□□□□□ -1.1
VPS13A-201ENST00000355766 BOLA2Q9H3K6 86 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 ZNF576Q9H609 170 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 LATS2Q9NRM7 1088 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 HERC5Q9UII4 1024 aaKnown RBP8.19□□□□□ -1.1
VPS13A-201ENST00000355766 CCDC171Q6TFL3 1326 aa8.19□□□□□ -1.1
VPS13A-201ENST00000355766 BDP1A6H8Y1 2624 aa8.18□□□□□ -1.1
VPS13A-201ENST00000355766 ZNF236Q9UL36 1845 aa8.18□□□□□ -1.1
VPS13A-201ENST00000355766 GPR75-ASB3A0A0A6YYF3 556 aa8.18□□□□□ -1.1
VPS13A-201ENST00000355766 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.18□□□□□ -1.1
VPS13A-201ENST00000355766 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.18□□□□□ -1.1
VPS13A-201ENST00000355766 SLC15A5A6NIM6 579 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms