RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 IFNL3Q8IZI9 196 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 NEDD1Q8NHV4 660 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 MTMR8Q96EF0 704 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 KLHDC7BQ96G42 594 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 NEK1Q96PY6 1258 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 MTA3Q9BTC8 594 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 LRRC2Q9BYS8 371 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 PDRG1Q9NUG6 133 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 SNTG2Q9NY99 539 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 MCM3APO60318 1980 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 FLT1P17948 1338 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 FAM229AH3BQW9 127 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 STARD3NLO95772 234 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 NID1P14543 1247 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 G3BP1Q13283 466 aaKnown RBP eCLIP2.72□□□□□ -1.97
VPS54-202ENST00000354504 SF3A1Q15459 793 aaKnown RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 ATP2B3Q16720 1220 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 FOXD4L6Q3SYB3 417 aaPredicted RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 EGFLAMQ63HQ2 1017 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 NAA16Q6N069 864 aaPredicted RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 APOA5Q6Q788 366 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 SHC4Q6S5L8 630 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 FOXD4L3Q6VB84 417 aaPredicted RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 CHST3Q7LGC8 479 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 REC114Q7Z4M0 266 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 LSRQ86X29 649 aaPredicted RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 LINC00301Q8NCQ3 95 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 RNPC3Q96LT9 517 aaKnown RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 PHF20Q9BVI0 1012 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 CHMP4AQ9BY43 222 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 LRRC3Q9BY71 257 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 CCDC86Q9H6F5 360 aaKnown RBP2.72□□□□□ -1.97
VPS54-202ENST00000354504 SPTLC3Q9NUV7 552 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 PRUNE2Q8WUY3 3088 aa2.72□□□□□ -1.97
VPS54-202ENST00000354504 LTBP3Q9NS15 1303 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 HIP1O00291 1037 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 ZNF500O60304 480 aaPredicted RBP2.71□□□□□ -1.97
VPS54-202ENST00000354504 PPP1R11O60927 126 aaPredicted RBP2.71□□□□□ -1.97
VPS54-202ENST00000354504 GYG1P46976 350 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 RCAN1P53805 252 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 NLRP12P59046 1061 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 DYNLL1P63167 89 aaKnown RBP2.71□□□□□ -1.97
VPS54-202ENST00000354504 NUCB2P80303 420 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 GPSM2P81274 684 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 PCDH1Q08174 1060 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 UBE4AQ14139 1066 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 BECN1Q14457 450 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 NKG7Q16617 165 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 SHROOM1Q2M3G4 852 aaPredicted RBP2.71□□□□□ -1.97
VPS54-202ENST00000354504 UVSSAQ2YD98 709 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 ZNF746Q6NUN9 644 aaPredicted RBP2.71□□□□□ -1.97
VPS54-202ENST00000354504 LRFN4Q6PJG9 635 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 ELOA2Q8IYF1 753 aaPredicted RBP2.71□□□□□ -1.97
VPS54-202ENST00000354504 ENAHQ8N8S7 591 aaPredicted RBP2.71□□□□□ -1.97
VPS54-202ENST00000354504 GALNT6Q8NCL4 622 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 GPBAR1Q8TDU6 330 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 PLPPR2Q96GM1 343 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 SPACA7Q96KW9 195 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 USP28Q96RU2 1077 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 UTP14AQ9BVJ6 771 aaKnown RBP2.71□□□□□ -1.97
VPS54-202ENST00000354504 BRIP1Q9BX63 1249 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 CLEC4MQ9H2X3 399 aaPredicted RBP2.71□□□□□ -1.97
VPS54-202ENST00000354504 TMX1Q9H3N1 280 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 TCP11L1Q9NUJ3 509 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 RTEL1Q9NZ71 1219 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 MAD2L2Q9UI95 211 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 TUBE1Q9UJT0 475 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 ISY1Q9ULR0 285 aaKnown RBP2.71□□□□□ -1.97
VPS54-202ENST00000354504 PCDHAC2Q9Y5I4 1007 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 CLIC4Q9Y696 253 aa2.71□□□□□ -1.97
VPS54-202ENST00000354504 NLRC5Q86WI3 1866 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 TRIP11Q15643 1979 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 PTPRDP23468 1912 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 THSD7BQ9C0I4 1608 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 CYP2D7A0A087X1C5 515 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 RASSF10A6NK89 507 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 ORC4O43929 436 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 CILPO75339 1184 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 IFIT1P09914 478 aaKnown RBP2.71□□□□□ -1.98
VPS54-202ENST00000354504 PRDX5P30044 214 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 PBX1P40424 430 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 MECOMQ03112 1051 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 NEXNQ0ZGT2 675 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 C21orf62-AS1Q17RA5 79 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 SOGA3Q5TF21 947 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 MCTP1Q6DN14 999 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 C11orf57Q6ZUT1 292 aaPredicted RBP2.71□□□□□ -1.98
VPS54-202ENST00000354504 COL23A1Q86Y22 540 aaPredicted RBP2.71□□□□□ -1.98
VPS54-202ENST00000354504 SULF2Q8IWU5 870 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 GATAD2BQ8WXI9 593 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 MKL1Q969V6 931 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 DDX11Q96FC9 970 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 OSBPL2Q9H1P3 480 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 FBRSQ9HAH7 460 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 DCP1AQ9NPI6 582 aaPredicted RBP2.71□□□□□ -1.98
VPS54-202ENST00000354504 DDX4Q9NQI0 724 aaKnown RBP2.71□□□□□ -1.98
VPS54-202ENST00000354504 USP21Q9UK80 565 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 PRR12Q9ULL5 1215 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 LEMD3Q9Y2U8 911 aa2.71□□□□□ -1.98
VPS54-202ENST00000354504 TRANK1O15050 2925 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms