RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PHEXP78562 749 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 ICA1Q05084 483 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 HABP4Q5JVS0 413 aaKnown RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 TRIM50Q86XT4 487 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 SULF1Q8IWU6 871 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 SAAL1Q96ER3 474 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 RUNDC3BQ96NL0 473 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 MPHOSPH6Q99547 160 aaKnown RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 OSBPL1AQ9BXW6 950 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 BABAM1Q9NWV8 329 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 PCNTO95613 3336 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 RASA4BC9J798 803 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 UBAP1LF5GYI3 381 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 GOLGA8RI6L899 631 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 RASA4O43374 803 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 LUC7L3O95232 432 aaKnown RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 PTPREP23469 700 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 LTKP29376 864 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 FXR1P51114 621 aaKnown RBP eCLIP9.38□□□□□ -0.91
RTN3-202ENST00000339997 CERKLQ49MI3 558 aaPredicted RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 EMBQ6PCB8 327 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 DDX42Q86XP3 938 aaKnown RBP eCLIP9.38□□□□□ -0.91
RTN3-202ENST00000339997 KIF2BQ8N4N8 673 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 GRK7Q8WTQ7 553 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 CFAP36Q96G28 342 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 OSBPL9Q96SU4 736 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 TYW1Q9NV66 732 aaKnown RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 HAUS2Q9NVX0 235 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 CHORDC1Q9UHD1 332 aaPredicted RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 CCDC195A0A1B0GUA6 201 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 ESYT2A0FGR8 921 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 POLD1P28340 1107 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 CYP2C19P33261 490 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 MDH1BQ5I0G3 518 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 STOX1Q6ZVD7 989 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 PCGF5Q86SE9 256 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 NLRP14Q86W24 1093 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 LARGE2Q8N3Y3 721 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 DNAAF3Q8N9W5 541 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 NOP53Q9NZM5 478 aaKnown RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 KDM3AQ9Y4C1 1321 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 GMNCA6NCL1 334 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 E9PMD0 336 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 EVI5O60447 810 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 RANBP1P43487 201 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 ATXN3P54252 364 aaPredicted RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 HADHQ16836 314 aaKnown RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 Q3C1V9 767 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 RESP18Q5W5W9 173 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 ALS2CLQ60I27 953 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 MAIP1Q8WWC4 291 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 RNF25Q96BH1 459 aaPredicted RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 LZTS2Q9BRK4 669 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 OSBPL5Q9H0X9 879 aaPredicted RBP9.38□□□□□ -0.91
RTN3-202ENST00000339997 ZWILCHQ9H900 591 aa9.38□□□□□ -0.91
RTN3-202ENST00000339997 IGKV5-2P06315 115 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 TMEM191BP0C7N4 346 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 SKIP12755 728 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 PLS3P13797 630 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 BRD2P25440 801 aaKnown RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 ATP6V1E1P36543 226 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 PIK3CAP42336 1068 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 TFAMQ00059 246 aaKnown RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 LRRC23Q53EV4 343 aaPredicted RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 NT5C1BQ96P26 610 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 SAYSD1Q9NPB0 183 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 AGPAT5Q9NUQ2 364 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 ABCF3Q9NUQ8 709 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 LIMA1Q9UHB6 759 aaKnown RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 NEDD4P46934 1319 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 ABCA9Q8IUA7 1624 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 GYG2O15488 501 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 KRT1P04264 644 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 LMNB1P20700 586 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 IQCB1Q15051 598 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 RYBPQ8N488 228 aaPredicted RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 SPATA4Q8NEY3 305 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 COG1Q8WTW3 980 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 SKA2Q8WVK7 121 aaPredicted RBP9.37□□□□□ -0.91
RTN3-202ENST00000339997 CYFIP2Q96F07 1278 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 FAM118BQ9BPY3 351 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 TMOD4Q9NZQ9 345 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 FBXL5Q9UKA1 691 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 FRMPD1Q5SYB0 1578 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 CFAP69A5D8W1 941 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 USP17L15C9J2P7 530 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 USP17L13C9JLJ4 530 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 USP17L11C9JVI0 530 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 USP17L18D6R9N7 530 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 USP17L22D6RA61 530 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 USP17L17D6RBQ6 530 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 USP17L19D6RCP7 530 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 USP17L20D6RJB6 530 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 PLA2G4BP0C869 781 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 CNGA1P29973 690 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 SOX11P35716 441 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 USP17L24Q0WX57 530 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 ARHGEF16Q5VV41 709 aa9.37□□□□□ -0.91
RTN3-202ENST00000339997 KRT80Q6KB66 452 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms