RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 HAUS3Q68CZ6 603 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 PPP1R18Q6NYC8 613 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 SEPT12Q8IYM1 358 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 FBXO28Q9NVF7 368 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 FAM184BQ9ULE4 1060 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 SNX24Q9Y343 169 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 PDS5AQ29RF7 1337 aaKnown RBP13.05□□□□□ -0.32
USP1-201ENST00000339950 MED24O75448 989 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 GLI1P08151 1106 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 LRCH2Q5VUJ6 765 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 CCDC170Q8IYT3 715 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 TRIM51Q9BSJ1 452 aa13.05□□□□□ -0.32
USP1-201ENST00000339950 RTFDC1Q9BY42 306 aaPredicted RBP13.05□□□□□ -0.32
USP1-201ENST00000339950 NOVA2Q9UNW9 492 aaKnown RBP13.05□□□□□ -0.32
USP1-201ENST00000339950 TESPA1A2RU30 521 aaPredicted RBP13.04□□□□□ -0.32
USP1-201ENST00000339950 TMEM150BA6NC51 233 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 DAPK3O43293 454 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 FGGP02679 453 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 GCLMP48507 274 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 LMBRD2Q68DH5 695 aaPredicted RBP13.04□□□□□ -0.32
USP1-201ENST00000339950 CCDC91Q7Z6B0 441 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 ACP6Q9NPH0 428 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 MED4Q9NPJ6 270 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 EIF4E1BA6NMX2 242 aaKnown RBP13.04□□□□□ -0.32
USP1-201ENST00000339950 ZBTB5O15062 677 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 PPIP5K2O43314 1243 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 APBA3O96018 575 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 CALCAP01258 141 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 PTK2Q05397 1052 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 TSEN2Q8NCE0 465 aaKnown RBP13.04□□□□□ -0.32
USP1-201ENST00000339950 SPATA20Q8TB22 786 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 LBHD1Q9BQE6 289 aaPredicted RBP13.04□□□□□ -0.32
USP1-201ENST00000339950 MMTAG2Q9BU76 263 aaKnown RBP13.04□□□□□ -0.32
USP1-201ENST00000339950 CD2APQ9Y5K6 639 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 KDM3BQ7LBC6 1761 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 PDE4DIPQ5VU43 2346 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 K7ENM7 598 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 PLCB3Q01970 1234 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 COG2Q14746 738 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 FAM186BQ8IYM0 893 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 TCHPQ9BT92 498 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.04□□□□□ -0.32
USP1-201ENST00000339950 PLAAQ9Y263 795 aa13.04□□□□□ -0.32
USP1-201ENST00000339950 FLOT1O75955 427 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 TUBBP07437 444 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 RPL13P26373 211 aaKnown RBP13.03□□□□□ -0.32
USP1-201ENST00000339950 ECE1P42892 770 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 PPFIA1Q13136 1202 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 SBK1Q52WX2 424 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 ASPRV1Q53RT3 343 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 PDXDC1Q6P996 788 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 LRRC31Q6UY01 552 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 SRLQ86TD4 932 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 CCDC105Q8IYK2 499 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 OGFOD1Q8N543 542 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 C4orf32Q8N8J7 132 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 DYDC2Q96IM9 177 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 REEP2Q9BRK0 252 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 AMNQ9BXJ7 453 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 SH2D4AQ9H788 454 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 TBK1Q9UHD2 729 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 PPP1R7Q15435 360 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 ZKSCAN8Q15776 578 aaPredicted RBP13.03□□□□□ -0.32
USP1-201ENST00000339950 TBC1D22AQ8WUA7 517 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 NT5C3AQ9H0P0 336 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 TISP43B9A030 160 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 GCOM1H8Y6P7 765 aaPredicted RBP13.03□□□□□ -0.32
USP1-201ENST00000339950 MYZAPP0CAP1 466 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 ITGA4P13612 1032 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 CRKP46108 304 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 TUBB4BP68371 445 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 ZNF543Q08ER8 600 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 BIRC3Q13489 604 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 KCNB1Q14721 858 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 AOC3Q16853 763 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 CDC42EP5Q6NZY7 148 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 PNMA8AQ86V59 439 aaPredicted RBP13.03□□□□□ -0.32
USP1-201ENST00000339950 ZIM3Q96PE6 472 aa13.03□□□□□ -0.32
USP1-201ENST00000339950 ANKRD62A6NC57 917 aa13.02□□□□□ -0.32
USP1-201ENST00000339950 AFPP02771 609 aaKnown RBP13.02□□□□□ -0.32
USP1-201ENST00000339950 EIF2AK2P19525 551 aaKnown RBP13.02□□□□□ -0.32
USP1-201ENST00000339950 PBX1P40424 430 aa13.02□□□□□ -0.32
USP1-201ENST00000339950 PRAMEF18Q5VWM3 479 aa13.02□□□□□ -0.32
USP1-201ENST00000339950 GALNT17Q6IS24 598 aa13.02□□□□□ -0.32
USP1-201ENST00000339950 GUF1Q8N442 669 aaKnown RBP13.02□□□□□ -0.32
USP1-201ENST00000339950 UBE2TQ9NPD8 197 aaPredicted RBP13.02□□□□□ -0.32
USP1-201ENST00000339950 C5P01031 1676 aa13.02□□□□□ -0.33
USP1-201ENST00000339950 A0A1W2PQC6 194 aa13.02□□□□□ -0.33
USP1-201ENST00000339950 DDTLA6NHG4 134 aaPredicted RBP13.02□□□□□ -0.33
USP1-201ENST00000339950 RAD51CO43502 376 aa13.02□□□□□ -0.33
USP1-201ENST00000339950 E2F5Q15329 346 aa13.02□□□□□ -0.33
USP1-201ENST00000339950 GRIPAP1Q4V328 841 aa13.02□□□□□ -0.33
USP1-201ENST00000339950 FAM102BQ5T8I3 360 aa13.02□□□□□ -0.33
USP1-201ENST00000339950 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.02□□□□□ -0.33
USP1-201ENST00000339950 C21orf2O43822 256 aa13.02□□□□□ -0.33
USP1-201ENST00000339950 RCAN1P53805 252 aa13.02□□□□□ -0.33
USP1-201ENST00000339950 MAP2K1Q02750 393 aaPredicted RBP13.02□□□□□ -0.33
USP1-201ENST00000339950 FAM182AQ5T1J6 154 aa13.02□□□□□ -0.33
USP1-201ENST00000339950 GLG1Q92896 1179 aa13.02□□□□□ -0.33
USP1-201ENST00000339950 CABS1Q96KC9 395 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms