RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 RUFY1Q96T51 708 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 IKZF4Q9H2S9 585 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 KCTD10Q9H3F6 313 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 EMILIN3Q9NT22 766 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 GRID2IPA4D2P6 1211 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 KRT18P05783 430 aaKnown RBP13.54□□□□□ -0.24
VPS33B-201ENST00000333371 CYP11B2P19099 503 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 MAGEA9P43362 315 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 KCNH2Q12809 1159 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 SLC18A3Q16572 532 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 EMBQ6PCB8 327 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 SLC30A10Q6XR72 485 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 P2RX7Q99572 595 aaKnown RBP13.54□□□□□ -0.24
VPS33B-201ENST00000333371 NRXN2Q9P2S2 1712 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 ZNF233A6NK53 670 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 TTLL1O95922 423 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 PTK2Q05397 1052 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 RNF10Q8N5U6 811 aaKnown RBP13.54□□□□□ -0.24
VPS33B-201ENST00000333371 USP40Q9NVE5 1235 aa13.54□□□□□ -0.24
VPS33B-201ENST00000333371 IGKV6D-41A0A0C4DH26 115 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 EIF3HO15372 352 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS33B-201ENST00000333371 RAD51CO43502 376 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 SHMT1P34896 483 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 EPS15P42566 896 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 NNTQ13423 1086 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 MEI1Q5TIA1 1274 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 ZFPM1Q8IX07 1006 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 CERS5Q8N5B7 392 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 PIK3R5Q8WYR1 880 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 INPP4AQ96PE3 977 aaPredicted RBP13.53□□□□□ -0.24
VPS33B-201ENST00000333371 GANQ9H2C0 597 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 GDF3Q9NR23 364 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 AJAP1Q9UKB5 411 aaPredicted RBP13.53□□□□□ -0.24
VPS33B-201ENST00000333371 GOLGA8KD6RF30 607 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 ZEB2O60315 1214 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 NR2F2P24468 414 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 LIG3P49916 1009 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 CACNB3P54284 484 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 PABPC4Q13310 644 aaKnown RBP eCLIP13.53□□□□□ -0.246e-11■■■■□ 25.6
VPS33B-201ENST00000333371 ASIC2Q16515 512 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 ZNF571Q7Z3V5 609 aaPredicted RBP13.53□□□□□ -0.24
VPS33B-201ENST00000333371 DDX42Q86XP3 938 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS33B-201ENST00000333371 CCDC65Q8IXS2 484 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 CAVIN3Q969G5 261 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 BMP2KQ9NSY1 1161 aaPredicted RBP13.53□□□□□ -0.24
VPS33B-201ENST00000333371 SERPINB13Q9UIV8 391 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 PCDHAC2Q9Y5I4 1007 aa13.53□□□□□ -0.24
VPS33B-201ENST00000333371 COL11A2P13942 1736 aaPredicted RBP13.53□□□□□ -0.24
VPS33B-201ENST00000333371 hCG_1984214I3L0E3 225 aa13.52□□□□□ -0.24
VPS33B-201ENST00000333371 KCNK3O14649 394 aa13.52□□□□□ -0.24
VPS33B-201ENST00000333371 ZBTB5O15062 677 aa13.52□□□□□ -0.24
VPS33B-201ENST00000333371 OPA1O60313 960 aa13.52□□□□□ -0.24
VPS33B-201ENST00000333371 NFIAQ12857 509 aa13.52□□□□□ -0.24
VPS33B-201ENST00000333371 GJB7Q6PEY0 223 aa13.52□□□□□ -0.24
VPS33B-201ENST00000333371 IFT20Q8IY31 132 aa13.52□□□□□ -0.24
VPS33B-201ENST00000333371 ZNF713Q8N859 430 aaPredicted RBP13.52□□□□□ -0.24
VPS33B-201ENST00000333371 ATAD5Q96QE3 1844 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 RSPH10B2B2RC85 870 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 RSPH10BP0C881 870 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 HOXD13P35453 343 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 MRPL12P52815 198 aaKnown RBP13.52□□□□□ -0.25
VPS33B-201ENST00000333371 GUCY1A3Q02108 690 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 KCNA1Q09470 495 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 TEKT1Q969V4 418 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 AP1M1Q9BXS5 423 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 EDEM3Q9BZQ6 932 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 LRRC27Q9C0I9 530 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 DBNDD1Q9H9R9 158 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 ZNF219Q9P2Y4 722 aaPredicted RBP13.52□□□□□ -0.25
VPS33B-201ENST00000333371 HDAC9Q9UKV0 1011 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 PCDHGC5Q9Y5F6 944 aa13.52□□□□□ -0.25
VPS33B-201ENST00000333371 MYBP10242 640 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 NOP2P46087 812 aaKnown RBP13.51□□□□□ -0.25
VPS33B-201ENST00000333371 CYP4A11Q02928 519 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 QRICH1Q2TAL8 776 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 DCAF17Q5H9S7 520 aaPredicted RBP13.51□□□□□ -0.25
VPS33B-201ENST00000333371 CFAP58Q5T655 872 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 IQCKQ8N0W5 287 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 MICALL1Q8N3F8 863 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 RBM46Q8TBY0 533 aaKnown RBP13.51□□□□□ -0.25
VPS33B-201ENST00000333371 RNPC3Q96LT9 517 aaKnown RBP13.51□□□□□ -0.25
VPS33B-201ENST00000333371 CEP63Q96MT8 703 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 FAM169AQ9Y6X4 670 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 PLIN4Q96Q06 1357 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 H0YIN7 160 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 POLD1P28340 1107 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 CASP4P49662 377 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 TTC31Q49AM3 519 aaPredicted RBP13.51□□□□□ -0.25
VPS33B-201ENST00000333371 PRR16Q569H4 304 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 ALS2CLQ60I27 953 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 IRF2BP2Q7Z5L9 587 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 SFR1Q86XK3 245 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 CATSPER3Q86XQ3 398 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 OR2W6PQ8NHA6 318 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 ATF5Q9Y2D1 282 aaPredicted RBP13.51□□□□□ -0.25
VPS33B-201ENST00000333371 PCDHA1Q9Y5I3 950 aa13.51□□□□□ -0.25
VPS33B-201ENST00000333371 SFI1A8K8P3 1242 aa13.5□□□□□ -0.25
VPS33B-201ENST00000333371 CLIC2O15247 247 aa13.5□□□□□ -0.25
VPS33B-201ENST00000333371 HLA-DOAP06340 250 aa13.5□□□□□ -0.25
VPS33B-201ENST00000333371 SLC12A3P55017 1021 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms