RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.98■□□□□ 0.152e-7■□□□□ 10
SSBP3-201ENST00000326956 CDCA7Q9BWT1 371 aaPredicted RBP15.98■□□□□ 0.15
SSBP3-201ENST00000326956 GPCPD1Q9NPB8 672 aa15.98■□□□□ 0.15
SSBP3-201ENST00000326956 NOVA2Q9UNW9 492 aaKnown RBP15.98■□□□□ 0.15
SSBP3-201ENST00000326956 NOC2LQ9Y3T9 749 aaKnown RBP15.98■□□□□ 0.15
SSBP3-201ENST00000326956 E9PMD0 336 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 DDR1Q08345 913 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 UBE2SQ16763 222 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 TCERG1LQ5VWI1 586 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 CPLX4Q7Z7G2 160 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 CACNA2D3Q8IZS8 1091 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 PROCA1Q8NCQ7 364 aaPredicted RBP15.97■□□□□ 0.15
SSBP3-201ENST00000326956 GIMAP7Q8NHV1 300 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 RIOX1Q9H6W3 641 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 ARMCX3Q9UH62 379 aaPredicted RBP15.97■□□□□ 0.15
SSBP3-201ENST00000326956 TMEM59LQ9UK28 342 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 HDAC9Q9UKV0 1011 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 PLA2G4BP0C869 781 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 TMOD1P28289 359 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 PPP2R2AP63151 447 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 ZNF804AQ7Z570 1209 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 SCFD2Q8WU76 684 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 UIMC1Q96RL1 719 aa15.97■□□□□ 0.15
SSBP3-201ENST00000326956 UTP11Q9Y3A2 253 aaKnown RBP15.97■□□□□ 0.15
SSBP3-201ENST00000326956 BTNL10A8MVZ5 291 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 MYBP10242 640 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 ACTN1P12814 892 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 ZNF844Q08AG5 666 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 ECM1Q16610 540 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 EXOC3L4Q17RC7 722 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 TPTE2Q6XPS3 522 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 GJA10Q969M2 543 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 GANQ9H2C0 597 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 MYH14Q7Z406 1995 aaKnown RBP15.96■□□□□ 0.15
SSBP3-201ENST00000326956 DAPK3O43293 454 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 H2AFZP0C0S5 128 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 CCDC172P0C7W6 258 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 MRPL12P52815 198 aaKnown RBP15.96■□□□□ 0.15
SSBP3-201ENST00000326956 MARSP56192 900 aaKnown RBP15.96■□□□□ 0.15
SSBP3-201ENST00000326956 ASPRV1Q53RT3 343 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 PPP4R3CPQ6ZMV5 832 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 H2AFVQ71UI9 128 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 ZNF571Q7Z3V5 609 aaPredicted RBP15.96■□□□□ 0.15
SSBP3-201ENST00000326956 METTL13Q8N6R0 699 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 C3orf20Q8ND61 904 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 AMACRQ9UHK6 382 aa15.96■□□□□ 0.15
SSBP3-201ENST00000326956 ATP2C2O75185 946 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 PDHBP11177 359 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 PLCG2P16885 1265 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 DCAF17Q5H9S7 520 aaPredicted RBP15.95■□□□□ 0.14
SSBP3-201ENST00000326956 AGBL2Q5U5Z8 902 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 DAAM2Q86T65 1068 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 SYCE1Q8N0S2 351 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 LRRC47Q8N1G4 583 aaKnown RBP15.95■□□□□ 0.14
SSBP3-201ENST00000326956 CUL5Q93034 780 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 FGFBP2Q9BYJ0 223 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 DPH5Q9H2P9 285 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 NAGPAQ9UK23 515 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 DOT1LQ8TEK3 1739 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 NPHP3-ACAD11A0A0J9YXS1 232 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 AFPP02771 609 aaKnown RBP15.95■□□□□ 0.14
SSBP3-201ENST00000326956 UCHL3P15374 230 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 SLC9A1P19634 815 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 EIF6P56537 245 aaKnown RBP15.95■□□□□ 0.14
SSBP3-201ENST00000326956 DHX9Q08211 1270 aaKnown RBP15.95■□□□□ 0.14
SSBP3-201ENST00000326956 UAP1Q16222 522 aaPredicted RBP15.95■□□□□ 0.14
SSBP3-201ENST00000326956 GKAP1Q5VSY0 366 aaPredicted RBP15.95■□□□□ 0.14
SSBP3-201ENST00000326956 ARMC9Q7Z3E5 817 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 SCFD1Q8WVM8 642 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 CXorf56Q9H5V9 222 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 CD248Q9HCU0 757 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 SLC40A1Q9NP59 571 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 DDX20Q9UHI6 824 aaKnown RBP15.95■□□□□ 0.14
SSBP3-201ENST00000326956 TRAPPC3O43617 180 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 GSCP56915 257 aaPredicted RBP15.95■□□□□ 0.14
SSBP3-201ENST00000326956 MAGOHP61326 146 aaKnown RBP15.95■□□□□ 0.14
SSBP3-201ENST00000326956 GRIK5Q16478 980 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 EDRF1Q3B7T1 1238 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 MAGOHBQ96A72 148 aaKnown RBP15.95■□□□□ 0.14
SSBP3-201ENST00000326956 TRIM31Q9BZY9 425 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 SLITRK6Q9H5Y7 841 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 FAM114A2Q9NRY5 505 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 SWAP70Q9UH65 585 aa15.95■□□□□ 0.14
SSBP3-201ENST00000326956 XRCC5P13010 732 aaKnown RBP15.94■□□□□ 0.14
SSBP3-201ENST00000326956 GCFC2P16383 781 aaKnown RBP15.94■□□□□ 0.14
SSBP3-201ENST00000326956 PRPF4BQ13523 1007 aaKnown RBP15.94■□□□□ 0.14
SSBP3-201ENST00000326956 DNAAF5Q86Y56 855 aa15.94■□□□□ 0.14
SSBP3-201ENST00000326956 TPCN2Q8NHX9 752 aa15.94■□□□□ 0.14
SSBP3-201ENST00000326956 SEC16BQ96JE7 1060 aa15.94■□□□□ 0.14
SSBP3-201ENST00000326956 POTEB3A0JP26 581 aa15.94■□□□□ 0.14
SSBP3-201ENST00000326956 POTECB2RU33 542 aa15.94■□□□□ 0.14
SSBP3-201ENST00000326956 POTEBQ6S5H4 581 aa15.94■□□□□ 0.14
SSBP3-201ENST00000326956 C6orf89Q6UWU4 347 aa15.94■□□□□ 0.14
SSBP3-201ENST00000326956 IRF2BP2Q7Z5L9 587 aa15.94■□□□□ 0.14
SSBP3-201ENST00000326956 A1CFQ9NQ94 594 aaKnown RBP15.94■□□□□ 0.14
SSBP3-201ENST00000326956 SLC12A6Q9UHW9 1150 aa15.94■□□□□ 0.14
SSBP3-201ENST00000326956 PNMA6FA0A0J9YX94 578 aa15.93■□□□□ 0.14
SSBP3-201ENST00000326956 H0YGN5 161 aa15.93■□□□□ 0.14
SSBP3-201ENST00000326956 ECHS1P30084 290 aa15.93■□□□□ 0.14
SSBP3-201ENST00000326956 SNCBQ16143 134 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms