RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 MS4A4AQ96JQ5 239 aa20.47■□□□□ 0.87
USP39-201ENST00000323701 SAMM50Q9Y512 469 aa20.47■□□□□ 0.87
USP39-201ENST00000323701 CCZ1BP86790 482 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 CCZ1P86791 482 aaPredicted RBP20.46■□□□□ 0.87
USP39-201ENST00000323701 SNAPC2Q13487 334 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 XRRA1Q6P2D8 792 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 C1orf186Q6ZWK4 172 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 FASTKD5Q7L8L6 764 aaKnown RBP20.46■□□□□ 0.87
USP39-201ENST00000323701 SFR1Q86XK3 245 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 CCDC65Q8IXS2 484 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 ZNF526Q8TF50 670 aaPredicted RBP20.46■□□□□ 0.87
USP39-201ENST00000323701 SH2D3AQ9BRG2 576 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 TBC1D22BQ9NU19 505 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 SOWAHBA6NEL2 793 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 KCNA2P16389 499 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 PBX1P40424 430 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 SCFD1Q8WVM8 642 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 GPRASP2Q96D09 838 aa20.46■□□□□ 0.87
USP39-201ENST00000323701 COPB1P53618 953 aaKnown RBP20.45■□□□□ 0.86
USP39-201ENST00000323701 SP2Q02086 613 aa20.45■□□□□ 0.86
USP39-201ENST00000323701 TBX2Q13207 712 aaPredicted RBP20.45■□□□□ 0.86
USP39-201ENST00000323701 CEP135Q66GS9 1140 aa20.45■□□□□ 0.86
USP39-201ENST00000323701 TRMT1LQ7Z2T5 733 aaKnown RBP20.45■□□□□ 0.86
USP39-201ENST00000323701 THAP9Q9H5L6 903 aa20.45■□□□□ 0.86
USP39-201ENST00000323701 CELF2O95319 508 aaKnown RBP20.45■□□□□ 0.86
USP39-201ENST00000323701 PGK2P07205 417 aa20.45■□□□□ 0.86
USP39-201ENST00000323701 NELFCDQ8IXH7 590 aa20.45■□□□□ 0.86
USP39-201ENST00000323701 MYOCDQ8IZQ8 938 aa20.45■□□□□ 0.86
USP39-201ENST00000323701 NACC1Q96RE7 527 aa20.45■□□□□ 0.86
USP39-201ENST00000323701 GBA2Q9HCG7 927 aaPredicted RBP20.45■□□□□ 0.86
USP39-201ENST00000323701 P4HBP07237 508 aaKnown RBP20.44■□□□□ 0.86
USP39-201ENST00000323701 HOXD13P35453 343 aa20.44■□□□□ 0.86
USP39-201ENST00000323701 ALDH5A1P51649 535 aaPredicted RBP20.44■□□□□ 0.86
USP39-201ENST00000323701 ZCWPW2Q504Y3 356 aa20.44■□□□□ 0.86
USP39-201ENST00000323701 CST9Q5W186 159 aa20.44■□□□□ 0.86
USP39-201ENST00000323701 BICDL2A1A5D9 508 aa20.44■□□□□ 0.86
USP39-201ENST00000323701 SPECC1LQ69YQ0 1117 aa20.44■□□□□ 0.86
USP39-201ENST00000323701 GTPBP4Q9BZE4 634 aaKnown RBP20.44■□□□□ 0.86
USP39-201ENST00000323701 FBXO40Q9UH90 709 aa20.44■□□□□ 0.86
USP39-201ENST00000323701 PFASO15067 1338 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 N4BP3O15049 544 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 MYBP10242 640 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 MUTP22033 750 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 SP4Q02446 784 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 LRRC55Q6ZSA7 311 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 NLRX1Q86UT6 975 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 FAM133AQ8N9E0 248 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 DNERQ8NFT8 737 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 BRI3BPQ8WY22 251 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 FGD4Q96M96 766 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 CTAGE1Q96RT6 745 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 PORCNQ9H237 461 aa20.43■□□□□ 0.86
USP39-201ENST00000323701 SPATA31C2B4DYI2 1134 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 BTBD19C9JJ37 291 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 SKILP12757 684 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 QARSP47897 775 aaKnown RBP20.42■□□□□ 0.86
USP39-201ENST00000323701 GSDMDP57764 484 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 KCNA1Q09470 495 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 KCTD17Q8N5Z5 321 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 KCTD10Q9H3F6 313 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 ZSWIM4Q9H7M6 989 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 POTEB2H3BUK9 544 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 OSBPP22059 807 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 PPP1R2P41236 205 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 UTP14CQ5TAP6 766 aaKnown RBP20.42■□□□□ 0.86
USP39-201ENST00000323701 EPM2AIP1Q7L775 607 aaPredicted RBP20.42■□□□□ 0.86
USP39-201ENST00000323701 CNOT6LQ96LI5 555 aaKnown RBP20.42■□□□□ 0.86
USP39-201ENST00000323701 IWS1Q96ST2 819 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 IKZF4Q9H2S9 585 aa20.42■□□□□ 0.86
USP39-201ENST00000323701 ADKP55263 362 aaKnown RBP20.41■□□□□ 0.86
USP39-201ENST00000323701 SPAG1Q07617 926 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 STXBP2Q15833 593 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 SEPT14Q6ZU15 432 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 DAW1Q8N136 415 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 NEK9Q8TD19 979 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 CCL15-CCL14A0A0B4J2E2 113 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 WDR64B1ANS9 1081 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 PDHXO00330 501 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 MAFGO15525 162 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 EDNRBP24530 442 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 EEF1GP26641 437 aaKnown RBP20.41■□□□□ 0.86
USP39-201ENST00000323701 ERVK-9P63128 1117 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 ERVK-24P63145 666 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 KRT76Q01546 638 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 CCL15Q16663 113 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 FIZ1Q96SL8 496 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 MAF1Q9H063 256 aa20.41■□□□□ 0.86
USP39-201ENST00000323701 EIF3JO75822 258 aaKnown RBP20.4■□□□□ 0.86
USP39-201ENST00000323701 PRPF6O94906 941 aaKnown RBP20.4■□□□□ 0.86
USP39-201ENST00000323701 SFPQP23246 707 aaKnown RBP eCLIP20.4■□□□□ 0.86
USP39-201ENST00000323701 RARRES1P49788 294 aa20.4■□□□□ 0.86
USP39-201ENST00000323701 MAPK7Q13164 816 aa20.4■□□□□ 0.86
USP39-201ENST00000323701 NOLC1Q14978 699 aaKnown RBP eCLIP20.4■□□□□ 0.86
USP39-201ENST00000323701 MAEAQ7L5Y9 396 aa20.4■□□□□ 0.86
USP39-201ENST00000323701 EEPD1Q7L9B9 569 aa20.4■□□□□ 0.86
USP39-201ENST00000323701 TC2NQ8N9U0 490 aa20.4■□□□□ 0.86
USP39-201ENST00000323701 TUBGCP2Q9BSJ2 902 aa20.4■□□□□ 0.86
USP39-201ENST00000323701 EFCC1Q9HA90 598 aa20.4■□□□□ 0.86
USP39-201ENST00000323701 WDR81Q562E7 1941 aa20.4■□□□□ 0.86
USP39-201ENST00000323701 RNF225M0QZC1 329 aaPredicted RBP20.39■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms