RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PDHA1P08559 390 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 HADHQ16836 314 aaKnown RBP12.43□□□□□ -0.42
VPS39-201ENST00000318006 BEND6Q5SZJ8 279 aaPredicted RBP12.43□□□□□ -0.42
VPS39-201ENST00000318006 CYP4F22Q6NT55 531 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 SEPT12Q8IYM1 358 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 SDCCAG3Q96C92 435 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 PITPNM3Q9BZ71 974 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 STK17AQ9UEE5 414 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 ANAPC5Q9UJX4 755 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 ADGRB1O14514 1584 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 COL15A1P39059 1388 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 GOLGA8QA0A0J9YX86 632 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 GOLGA8OA6NCC3 632 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 GOLGA8NF8WBI6 632 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 SERPING1P05155 500 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 KCNJ6P48051 423 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 CDK8P49336 464 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 PPP2R2AP63151 447 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 KRT80Q6KB66 452 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 COA7Q96BR5 231 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 COA1Q9GZY4 146 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 IRAK4Q9NWZ3 460 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 SH3BP5O60239 455 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 TTC4O95801 387 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 CDC25AP30304 524 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 YWHAGP61981 247 aaKnown RBP eCLIP12.43□□□□□ -0.42
VPS39-201ENST00000318006 MB21D1Q8N884 522 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 CEP70Q8NHQ1 597 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 VIPAS39Q9H9C1 493 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.43□□□□□ -0.42
VPS39-201ENST00000318006 PI4KBQ9UBF8 816 aa12.43□□□□□ -0.42
VPS39-201ENST00000318006 MYO3AQ8NEV4 1616 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 SRGAP2O75044 1071 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 PLEKHA8P1O95397 391 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 CCNE1P24864 410 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 PABPC4Q13310 644 aaKnown RBP eCLIP12.42□□□□□ -0.42
VPS39-201ENST00000318006 MMEL1Q495T6 779 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 SGO2Q562F6 1265 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 MB21D2Q8IYB1 491 aaPredicted RBP12.42□□□□□ -0.42
VPS39-201ENST00000318006 PIP4K2CQ8TBX8 421 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 EFHD1Q9BUP0 239 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 ADGRG1Q9Y653 693 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 GDF11O95390 407 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 BMP3P12645 472 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 PRDX5P30044 214 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 BSPRYQ5W0U4 402 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 ARL6IP4Q66PJ3 421 aaKnown RBP12.42□□□□□ -0.42
VPS39-201ENST00000318006 GJA10Q969M2 543 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 GJB4Q9NTQ9 266 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 ABHD10Q9NUJ1 306 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 TBK1Q9UHD2 729 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 PACSIN2Q9UNF0 486 aaPredicted RBP12.42□□□□□ -0.42
VPS39-201ENST00000318006 NEDD4P46934 1319 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 H0YCG3 227 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 NPR1P16066 1061 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 FKBP3Q00688 224 aaKnown RBP12.42□□□□□ -0.42
VPS39-201ENST00000318006 DEUP1Q05D60 604 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 FBXW10Q5XX13 1052 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 GSPT2Q8IYD1 628 aaKnown RBP12.42□□□□□ -0.42
VPS39-201ENST00000318006 TRIML2Q8N7C3 387 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 ATP6V1G3Q96LB4 118 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 INTUQ9ULD6 942 aa12.42□□□□□ -0.42
VPS39-201ENST00000318006 TARSL2A2RTX5 802 aaKnown RBP12.41□□□□□ -0.42
VPS39-201ENST00000318006 SPAG7O75391 227 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 KRT19P08727 400 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 KRT3P12035 628 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 MRPS25P82663 173 aaKnown RBP12.41□□□□□ -0.42
VPS39-201ENST00000318006 ALX1Q15699 326 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 ODR4Q5SWX8 454 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 SMCR8Q8TEV9 937 aaPredicted RBP12.41□□□□□ -0.42
VPS39-201ENST00000318006 PPWD1Q96BP3 646 aaKnown RBP12.41□□□□□ -0.42
VPS39-201ENST00000318006 MTA3Q9BTC8 594 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 OSBPL1AQ9BXW6 950 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 MLXIPQ9HAP2 919 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 STK36Q9NRP7 1315 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 MYO1FO00160 1098 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 GRAMD1BQ3KR37 738 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 CYB5R4Q7L1T6 521 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 PAGR1Q9BTK6 254 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 AP1M1Q9BXS5 423 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 C1orf167Q5SNV9 1468 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 CA4P22748 312 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 LIG4P49917 911 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 MAGOHP61326 146 aaKnown RBP12.41□□□□□ -0.42
VPS39-201ENST00000318006 PDCD2Q16342 344 aaPredicted RBP12.41□□□□□ -0.42
VPS39-201ENST00000318006 SYT2Q8N9I0 419 aaPredicted RBP12.41□□□□□ -0.42
VPS39-201ENST00000318006 KCNV2Q8TDN2 545 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 CDKL2Q92772 493 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 CELF1Q92879 486 aaKnown RBP12.41□□□□□ -0.42
VPS39-201ENST00000318006 ALDH8A1Q9H2A2 487 aaPredicted RBP12.41□□□□□ -0.42
VPS39-201ENST00000318006 MRPL46Q9H2W6 279 aaKnown RBP12.41□□□□□ -0.42
VPS39-201ENST00000318006 AFG3L2Q9Y4W6 797 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 EXOC1LA0A1B0GW35 172 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 VSNL1P62760 191 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 TSGA10IPQ3SY00 556 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 ARMCX5Q6P1M9 558 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 PAGE5Q96GU1 130 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 DYDC2Q96IM9 177 aa12.41□□□□□ -0.42
VPS39-201ENST00000318006 GPR101Q96P66 508 aaPredicted RBP12.41□□□□□ -0.42
VPS39-201ENST00000318006 GARSP41250 739 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms