RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 NPY5RQ15761 445 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 GRIK4Q16099 956 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 PRR16Q569H4 304 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 CNKSR3Q6P9H4 555 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 RUFY4Q6ZNE9 571 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 ZBTB10Q96DT7 871 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 OSBPL7Q9BZF2 842 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 PCDHA4Q9UN74 947 aa18.54■□□□□ 0.56
LSM1-201ENST00000311351 IPO5O00410 1097 aaKnown RBP18.53■□□□□ 0.56
LSM1-201ENST00000311351 DHX15O43143 795 aaKnown RBP18.53■□□□□ 0.56
LSM1-201ENST00000311351 EDIL3O43854 480 aa18.53■□□□□ 0.56
LSM1-201ENST00000311351 BAIAP3O94812 1187 aa18.53■□□□□ 0.56
LSM1-201ENST00000311351 PARNO95453 639 aaKnown RBP18.53■□□□□ 0.56
LSM1-201ENST00000311351 WDR5P61964 334 aaKnown RBP18.53■□□□□ 0.56
LSM1-201ENST00000311351 IGBP1P78318 339 aa18.53■□□□□ 0.56
LSM1-201ENST00000311351 TMCO2Q7Z6W1 182 aaPredicted RBP18.53■□□□□ 0.56
LSM1-201ENST00000311351 LENG9Q96B70 501 aa18.53■□□□□ 0.56
LSM1-201ENST00000311351 SLC9A7Q96T83 725 aa18.53■□□□□ 0.56
LSM1-201ENST00000311351 ZNF577Q9BSK1 485 aa18.53■□□□□ 0.56
LSM1-201ENST00000311351 AZI2Q9H6S1 392 aa18.53■□□□□ 0.56
LSM1-201ENST00000311351 TUBE1Q9UJT0 475 aa18.53■□□□□ 0.56
LSM1-201ENST00000311351 KCNJ14Q9UNX9 436 aa18.53■□□□□ 0.56
LSM1-201ENST00000311351 MYH9P35579 1960 aaKnown RBP18.53■□□□□ 0.56
LSM1-201ENST00000311351 STK36Q9NRP7 1315 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 CDKL5O76039 1030 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 CTDNEP1O95476 244 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 FOSL2P15408 326 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 CIITAP33076 1130 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 KCNJ6P48051 423 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 DEFB103AP81534 67 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 PLCB4Q15147 1175 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 ANKRD1Q15327 319 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 BLIDQ8IZY5 108 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 NECAB1Q8N987 351 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 GJB4Q9NTQ9 266 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 TRPC6Q9Y210 931 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 PCDHA11Q9Y5I1 949 aa18.52■□□□□ 0.56
LSM1-201ENST00000311351 M0R2N6 131 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 CAND2O75155 1236 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 ATG7O95352 703 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 INSRRP14616 1297 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 STAT5BP51692 787 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 NEK4P51957 841 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 ME3Q16798 604 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 C8orf34Q49A92 452 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 MARCH8Q5T0T0 291 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 ABHD15Q6UXT9 468 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 HERC6Q8IVU3 1022 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 CCDC60Q8IWA6 550 aaPredicted RBP18.51■□□□□ 0.55
LSM1-201ENST00000311351 DAGLBQ8NCG7 672 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 TBCKQ8TEA7 893 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 TRAPPC12Q8WVT3 735 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 PRDM12Q9H4Q4 367 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 SLC28A3Q9HAS3 691 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 LOXHD1Q8IVV2 1947 aa18.51■□□□□ 0.55
LSM1-201ENST00000311351 IGKV6D-21A0A0A0MT36 114 aa18.5■□□□□ 0.55
LSM1-201ENST00000311351 MBLAC1A4D2B0 266 aaPredicted RBP18.5■□□□□ 0.55
LSM1-201ENST00000311351 BACH1O14867 736 aa18.5■□□□□ 0.55
LSM1-201ENST00000311351 EIF5BO60841 1220 aaKnown RBP18.5■□□□□ 0.55
LSM1-201ENST00000311351 ARHGEF15O94989 841 aa18.5■□□□□ 0.55
LSM1-201ENST00000311351 CA3P07451 260 aa18.5■□□□□ 0.55
LSM1-201ENST00000311351 PPP2R2DQ66LE6 453 aa18.5■□□□□ 0.55
LSM1-201ENST00000311351 PLPPR4Q7Z2D5 763 aa18.5■□□□□ 0.55
LSM1-201ENST00000311351 DBF4BQ8NFT6 615 aa18.5■□□□□ 0.55
LSM1-201ENST00000311351 TDP2O95551 362 aa18.49■□□□□ 0.55
LSM1-201ENST00000311351 MIS18BP1Q6P0N0 1132 aa18.49■□□□□ 0.55
LSM1-201ENST00000311351 TAF2Q6P1X5 1199 aa18.49■□□□□ 0.55
LSM1-201ENST00000311351 MAFAQ8NHW3 353 aaPredicted RBP18.49■□□□□ 0.55
LSM1-201ENST00000311351 PHOSPHO2Q8TCD6 241 aa18.49■□□□□ 0.55
LSM1-201ENST00000311351 DNAJB3Q8WWF6 145 aa18.49■□□□□ 0.55
LSM1-201ENST00000311351 GTF3C6Q969F1 213 aa18.49■□□□□ 0.55
LSM1-201ENST00000311351 GJA10Q969M2 543 aa18.49■□□□□ 0.55
LSM1-201ENST00000311351 PHF20Q9BVI0 1012 aa18.49■□□□□ 0.55
LSM1-201ENST00000311351 TBC1D22BQ9NU19 505 aa18.49■□□□□ 0.55
LSM1-201ENST00000311351 ORC3Q9UBD5 711 aaPredicted RBP18.49■□□□□ 0.55
LSM1-201ENST00000311351 COL4A4P53420 1690 aaPredicted RBP18.48■□□□□ 0.55
LSM1-201ENST00000311351 ABHD14A-ACY1A0A1B0GW23 586 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 POTEB3A0JP26 581 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 MSH4O15457 936 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 MGAT3Q09327 533 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 ST3GAL1Q11201 340 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 IKBKEQ14164 716 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 PLEKHG4Q58EX7 1191 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 FAM26DQ5JW98 314 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 FAM160B1Q5W0V3 765 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 POTEHQ6S545 545 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 POTEBQ6S5H4 581 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.48■□□□□ 0.555e-7■□□□□ 9.5
LSM1-201ENST00000311351 FAM49AQ9H0Q0 323 aaPredicted RBP18.48■□□□□ 0.55
LSM1-201ENST00000311351 ZNF302Q9NR11 478 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 EVPLQ92817 2033 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 PRUNE2Q8WUY3 3088 aa18.48■□□□□ 0.55
LSM1-201ENST00000311351 RRN3P2A6NIE6 340 aa18.47■□□□□ 0.55
LSM1-201ENST00000311351 CHRNA1P02708 482 aa18.47■□□□□ 0.55
LSM1-201ENST00000311351 GHRP10912 638 aa18.47■□□□□ 0.55
LSM1-201ENST00000311351 FDPSP14324 419 aaKnown RBP18.47■□□□□ 0.55
LSM1-201ENST00000311351 USP11P51784 963 aa18.47■□□□□ 0.55
LSM1-201ENST00000311351 KRT76Q01546 638 aa18.47■□□□□ 0.55
LSM1-201ENST00000311351 MKRN4PQ13434 485 aaPredicted RBP18.47■□□□□ 0.55
LSM1-201ENST00000311351 NONOQ15233 471 aaKnown RBP eCLIP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms