RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 FAM180AQ6UWF9 173 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 TEKT1Q969V4 418 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 LRGUKQ96M69 825 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 ISCUQ9H1K1 167 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 KDM4CQ9H3R0 1056 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 KLHL14Q9P2G3 628 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 PPP1R3GB7ZBB8 358 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 PODXLO00592 558 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 KRT15P19012 456 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 IGBP1P78318 339 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 LACTB2Q53H82 288 aaPredicted RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 C6orf118Q5T5N4 469 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 HDDC2Q7Z4H3 204 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 SPATA5Q8NB90 893 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 TAF1DQ9H5J8 278 aaPredicted RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 KCNG1Q9UIX4 513 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 ZNF229Q9UJW7 825 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 AGTP01019 485 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 SKIP12755 728 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 IL2RBP14784 551 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 HAND2P61296 217 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 HAUS3Q68CZ6 603 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 JADE1Q6IE81 842 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 NLRP14Q86W24 1093 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 TMEM109Q9BVC6 243 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 NHEJ1Q9H9Q4 299 aaPredicted RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 KLC4Q9NSK0 619 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 CNOT7Q9UIV1 285 aaKnown RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 NEDD4P46934 1319 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 B4E1Z4 1266 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 EXOC5O00471 708 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 N4BP1O75113 896 aaKnown RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 SUPT3HO75486 399 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 HLA-DPA1P20036 260 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 STX2P32856 288 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 TMED10P49755 219 aaKnown RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 FOXO4P98177 505 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 GABPAQ06546 454 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 MRPL28Q13084 256 aaKnown RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 PTGISQ16647 500 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 SBK1Q52WX2 424 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 PGM2Q96G03 612 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 TEKT2Q9UIF3 430 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 ZNF532Q9HCE3 1301 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 KIF28PB7ZC32 967 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 TROVE2P10155 538 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS35-201ENST00000299138 GGCXP38435 758 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 OCA2Q04671 838 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 UNC13DQ70J99 1090 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 PPWD1Q96BP3 646 aaKnown RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 SENP1Q9P0U3 644 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 TTC7AQ9ULT0 858 aaPredicted RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 SUN1O94901 812 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 HEXIM1O94992 359 aaKnown RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 MBD4O95243 580 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 PDHA1P08559 390 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 ZAP70P43403 619 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 TMTC4Q5T4D3 741 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 SEL1L2Q5TEA6 688 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 TRAF7Q6Q0C0 670 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 SYDE1Q6ZW31 735 aaPredicted RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 TRMT10CQ7L0Y3 403 aaKnown RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 CTAGE3PQ8IX95 158 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 SLC17A8Q8NDX2 589 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 PCDHA4Q9UN74 947 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 SAMM50Q9Y512 469 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 COPG1Q9Y678 874 aaKnown RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 TNKSO95271 1327 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 MCF2LO15068 1137 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 PTCD1O75127 700 aaKnown RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 ANXA1P04083 346 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 OR52Z1P0C646 297 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 NPR1P16066 1061 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 DRG2P55039 364 aaKnown RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 PFKFB3Q16875 520 aaPredicted RBP6.92□□□□□ -1.3
VPS35-201ENST00000299138 SPDYAQ5MJ70 313 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 KRT80Q6KB66 452 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 TTLL11Q8NHH1 800 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 PNKPQ96T60 521 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 MRGBPQ9NV56 204 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 TLK1Q9UKI8 766 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 BAG5Q9UL15 447 aa6.92□□□□□ -1.3
VPS35-201ENST00000299138 FER1L4A9Z1Z3 1794 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 MAGEB6P1A0A0J9YX57 407 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 MAP3K7O43318 606 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 H2AFZP0C0S5 128 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 SKIV2L2P42285 1042 aaKnown RBP6.91□□□□□ -1.3
VPS35-201ENST00000299138 IFT88Q13099 833 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 CC2D2BQ6DHV5 1058 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 OTUD7BQ6GQQ9 843 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 H2AFVQ71UI9 128 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 ANKS1AQ92625 1134 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 VPS16Q9H269 839 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 HSD3B7Q9H2F3 369 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 TXLNGQ9NUQ3 528 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 TYW1Q9NV66 732 aaKnown RBP6.91□□□□□ -1.3
VPS35-201ENST00000299138 STMN3Q9NZ72 180 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 TTC26A0AVF1 554 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 POTEB3A0JP26 581 aa6.91□□□□□ -1.3
VPS35-201ENST00000299138 DAB1O75553 588 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms