RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 RAPGEF1Q13905 1077 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 TMOD2Q9NZR1 351 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 JRKLQ9Y4A0 524 aa20.23■□□□□ 0.83
SHKBP1-201ENST00000291842 SPDYE2BA6NHP3 402 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 KIF20AO95235 890 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 SPDYE6P0CI01 402 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 POLD1P28340 1107 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 CIITAP33076 1130 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 NAP1L1P55209 391 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 NFRKBQ6P4R8 1299 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 WDR18Q9BV38 432 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 IKZF4Q9H2S9 585 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 VEZTQ9HBM0 779 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 ARHGEF10LQ9HCE6 1279 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 SMARCAL1Q9NZC9 954 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 SNX12Q9UMY4 172 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 N4BP1O75113 896 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 CKAP4Q07065 602 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 KNOP1Q1ED39 458 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 SLC9C1Q4G0N8 1177 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 MCTP2Q6DN12 878 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 PKNOX2Q96KN3 472 aa20.22■□□□□ 0.83
SHKBP1-201ENST00000291842 IGLV3-22A0A075B6J6 115 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 MARSP56192 900 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 CASP8Q14790 479 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 TPH2Q8IWU9 490 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 FAM133AQ8N9E0 248 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 GDAP1L1Q96MZ0 367 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 EDEM3Q9BZQ6 932 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 PDGFDQ9GZP0 370 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 EHD2Q9NZN4 543 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 ZNF70Q9UC06 446 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 HDAC9Q9UKV0 1011 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 SCAF8Q9UPN6 1271 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 RABGAP1Q9Y3P9 1069 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 GCNT3O95395 438 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 MRPS25P82663 173 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 EDRF1Q3B7T1 1238 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 WDR93Q6P2C0 686 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 CREG2Q8IUH2 290 aa20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 HERC5Q9UII4 1024 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-201ENST00000291842 CLIC2O15247 247 aa20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 SLC26A4O43511 780 aa20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 SLC9A1P19634 815 aa20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 MAPK8IP2Q13387 824 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 DLGAP5Q15398 846 aa20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 DCAF17Q5H9S7 520 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 GSPT2Q8IYD1 628 aaKnown RBP20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 ZNF277Q9NRM2 450 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 SSU72P8A0A1W2PR75 194 aa20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 LRRIQ3A6PVS8 624 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 SERPING1P05155 500 aa20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 MATR3P43243 847 aaKnown RBP eCLIP20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 RSBN1LQ6PCB5 846 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 EPM2AIP1Q7L775 607 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 ZC3H3Q8IXZ2 948 aaKnown RBP20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 ALS2CR12Q96Q35 445 aa20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 TMEM39BQ9GZU3 492 aa20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 ARMCX3Q9UH62 379 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 ZBTB21Q9ULJ3 1066 aa20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 TMX2Q9Y320 296 aa20.2■□□□□ 0.82
SHKBP1-201ENST00000291842 PIK3CDO00329 1044 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 TBCAO75347 108 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 CYP3A4P08684 503 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 CASP4P49662 377 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 LRCH2Q5VUJ6 765 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 PPP4R3CPQ6ZMV5 832 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 SUPT20HQ8NEM7 779 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 DYDC2Q96IM9 177 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 GLIS2Q9BZE0 524 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 GBP3Q9H0R5 595 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 GOPCQ9HD26 462 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 FBXO28Q9NVF7 368 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 FAM184BQ9ULE4 1060 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 AKAP3O75969 853 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 DNA2P51530 1060 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 TCERG1LQ5VWI1 586 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 RINT1Q6NUQ1 792 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 OTOP1Q7RTM1 612 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 OSBPL9Q96SU4 736 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 GANQ9H2C0 597 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 ADAMTS1Q9UHI8 967 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 TRAF3IP3Q9Y228 551 aa20.19■□□□□ 0.82
SHKBP1-201ENST00000291842 A0A087X0T9 212 aa20.18■□□□□ 0.82
SHKBP1-201ENST00000291842 GCOM1H8Y6P7 765 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-201ENST00000291842 EYA4O95677 639 aa20.18■□□□□ 0.82
SHKBP1-201ENST00000291842 FAM228BP0C875 321 aa20.18■□□□□ 0.82
SHKBP1-201ENST00000291842 POLR2MP0CAP2 368 aa20.18■□□□□ 0.82
SHKBP1-201ENST00000291842 EZH2Q15910 746 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-201ENST00000291842 SLC15A2Q16348 729 aa20.18■□□□□ 0.82
SHKBP1-201ENST00000291842 KSR1Q8IVT5 923 aa20.18■□□□□ 0.82
SHKBP1-201ENST00000291842 POLR3CQ9BUI4 534 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-201ENST00000291842 CNTNAP1P78357 1384 aa20.18■□□□□ 0.82
SHKBP1-201ENST00000291842 PJA2O43164 708 aa20.17■□□□□ 0.82
SHKBP1-201ENST00000291842 SLITRK3O94933 977 aa20.17■□□□□ 0.82
SHKBP1-201ENST00000291842 TNNT3P45378 269 aaPredicted RBP20.17■□□□□ 0.82
SHKBP1-201ENST00000291842 KLHL30Q0D2K2 578 aa20.17■□□□□ 0.82
SHKBP1-201ENST00000291842 LARGE2Q8N3Y3 721 aa20.17■□□□□ 0.82
SHKBP1-201ENST00000291842 RPGRIP1Q96KN7 1286 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms