RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 PADI6Q6TGC4 694 aa20.08■□□□□ 0.8
PCDH1-201ENST00000287008 GJB4Q9NTQ9 266 aa20.08■□□□□ 0.8
PCDH1-201ENST00000287008 CCDC62Q6P9F0 684 aa20.08■□□□□ 0.8
PCDH1-201ENST00000287008 MB21D2Q8IYB1 491 aaPredicted RBP20.08■□□□□ 0.8
PCDH1-201ENST00000287008 CDKL2Q92772 493 aa20.08■□□□□ 0.8
PCDH1-201ENST00000287008 GOLGA8CPA6NN73 597 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 RPS6KA2Q15349 733 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 CCNYQ8ND76 341 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 RBM46Q8TBY0 533 aaKnown RBP20.07■□□□□ 0.8
PCDH1-201ENST00000287008 HOMER3Q9NSC5 361 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 DAGLAQ9Y4D2 1042 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 TNPO2O14787 897 aaKnown RBP20.07■□□□□ 0.8
PCDH1-201ENST00000287008 NSUN4Q96CB9 384 aaKnown RBP20.07■□□□□ 0.8
PCDH1-201ENST00000287008 NDST4Q9H3R1 872 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 THAP9Q9H5L6 903 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 HGSO14964 777 aaPredicted RBP20.07■□□□□ 0.8
PCDH1-201ENST00000287008 STX2P32856 288 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 ZBED6P86452 979 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 C12orf60Q5U649 245 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 CAPN12Q6ZSI9 719 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 HEXIM2Q96MH2 286 aaKnown RBP20.07■□□□□ 0.8
PCDH1-201ENST00000287008 MMP19Q99542 508 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 RYBPQ8N488 228 aaPredicted RBP20.07■□□□□ 0.8
PCDH1-201ENST00000287008 PPP4R1Q8TF05 950 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 LY9Q9HBG7 655 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 KIAA1586Q9HCI6 787 aa20.07■□□□□ 0.8
PCDH1-201ENST00000287008 QARSP47897 775 aaKnown RBP20.06■□□□□ 0.8
PCDH1-201ENST00000287008 UNC13DQ70J99 1090 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 FAM133AQ8N9E0 248 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 OR6B3Q8NGW1 331 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 GCNAQ96QF7 691 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 TOB2Q14106 344 aaPredicted RBP20.06■□□□□ 0.8
PCDH1-201ENST00000287008 SCARA5Q6ZMJ2 495 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 SLITRK6Q9H5Y7 841 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 P4HBP07237 508 aaKnown RBP20.06■□□□□ 0.8
PCDH1-201ENST00000287008 ANKRD42Q8N9B4 389 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 CABS1Q96KC9 395 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 MXD3Q9BW11 206 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 GBP1P32455 592 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 GKAP1Q5VSY0 366 aaPredicted RBP20.06■□□□□ 0.8
PCDH1-201ENST00000287008 SAMSN1Q9NSI8 373 aaKnown RBP20.06■□□□□ 0.8
PCDH1-201ENST00000287008 ANAPC5Q9UJX4 755 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 INPP5FQ9Y2H2 1132 aa20.06■□□□□ 0.8
PCDH1-201ENST00000287008 IPO5O00410 1097 aaKnown RBP20.05■□□□□ 0.8
PCDH1-201ENST00000287008 LINC00116Q8NCU8 138 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 RPAP3Q9H6T3 665 aaPredicted RBP20.05■□□□□ 0.8
PCDH1-201ENST00000287008 ASB14A6NK59 587 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 EIF3CLB5ME19 914 aaKnown RBP20.05■□□□□ 0.8
PCDH1-201ENST00000287008 SRGAP2BP0DMP2 458 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 ZNF131P52739 623 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 TNFAIP2Q03169 654 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 ORC2Q13416 577 aaPredicted RBP20.05■□□□□ 0.8
PCDH1-201ENST00000287008 BRD3Q15059 726 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 C11orf57Q6ZUT1 292 aaPredicted RBP20.05■□□□□ 0.8
PCDH1-201ENST00000287008 ATG9AQ7Z3C6 839 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 MCUR1Q96AQ8 359 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 EIF3CQ99613 913 aaKnown RBP20.05■□□□□ 0.8
PCDH1-201ENST00000287008 CALN1Q9BXU9 219 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 SPATA31A5Q5VU36 1347 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 SPATA31A7Q8IWB4 1347 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 CEP57Q86XR8 500 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 ADGRF4Q8IZF3 695 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 XXYLT1Q8NBI6 393 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 BANK1Q8NDB2 785 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 RUNDC3BQ96NL0 473 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 OSBPL5Q9H0X9 879 aaPredicted RBP20.05■□□□□ 0.8
PCDH1-201ENST00000287008 ZNF302Q9NR11 478 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 BARHL2Q9NY43 387 aa20.05■□□□□ 0.8
PCDH1-201ENST00000287008 RNF40O75150 1001 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 YWHAGP61981 247 aaKnown RBP eCLIP20.04■□□□□ 0.8
PCDH1-201ENST00000287008 PPARDQ03181 441 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 COG2Q14746 738 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 SKA2Q8WVK7 121 aaPredicted RBP20.04■□□□□ 0.8
PCDH1-201ENST00000287008 RILPQ96NA2 401 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 A0A087WWV3 80 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 MAPK8IP2Q13387 824 aaPredicted RBP20.04■□□□□ 0.8
PCDH1-201ENST00000287008 LDHDQ86WU2 507 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 NOC2LQ9Y3T9 749 aaKnown RBP20.04■□□□□ 0.8
PCDH1-201ENST00000287008 NRKQ7Z2Y5 1582 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 TAF1CQ15572 869 aaPredicted RBP20.04■□□□□ 0.8
PCDH1-201ENST00000287008 CEP85LQ5SZL2 805 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.04■□□□□ 0.8
PCDH1-201ENST00000287008 GABBR1Q9UBS5 961 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 ZBTB12Q9Y330 459 aaPredicted RBP20.04■□□□□ 0.8
PCDH1-201ENST00000287008 ENTPD3O75355 529 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 ZNF568Q3ZCX4 644 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 MYRIPQ8NFW9 859 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 MED14O60244 1454 aa20.04■□□□□ 0.8
PCDH1-201ENST00000287008 SGK1O00141 431 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 KRT10P13645 584 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 RBL2Q08999 1139 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 SWSAP1Q6NVH7 229 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 CACYBPQ9HB71 228 aaKnown RBP20.03■□□□□ 0.8
PCDH1-201ENST00000287008 SGMS1Q86VZ5 419 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 ELP3Q9H9T3 547 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 DENND3A2RUS2 1198 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 CCDC160A6NGH7 325 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 MCF2LO15068 1137 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 PRPSAP2O60256 369 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 SAT1P21673 171 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms